Array 1 170968-169799 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CWSO01000004.1 Vibrio cholerae strain A325, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    170967	    28	 100.0	    32	............................	TTTCAAAAAACATCGACGGTCAACACATCGAC 	
    170907	    28	 100.0	    32	............................	GCCACAGCAAGATAGAAGAGTGGTGGCTGAAA 	
    170847	    28	 100.0	    32	............................	TTGATTGGATATTTGGCTTTGTTCGTGTTTGT 	
    170787	    28	 100.0	    33	............................	TTTTTGGGGTTCCTTGATTTGTTTCATCATTGT	
    170726	    28	 100.0	    32	............................	GCAACCGTGGTCATCAAGGTGCGCTTGTTGGT 	
    170666	    28	 100.0	    32	............................	TTGAAGAGTTGAAGGCGAAGCACCCTGATCTG 	
    170606	    28	 100.0	    32	............................	TTTGAATTCCTTCTCACGGCGAAGAAGCTTGT 	
    170546	    28	 100.0	    32	............................	CACTAGCTCACTGAATGACAGATTTTTTGCTG 	
    170486	    28	 100.0	    32	............................	GCCACCTGATTTATCTGCGCCTTGGTCATCAG 	
    170426	    28	 100.0	    32	............................	CATCACGTGCGGCGTCACTTCTAAGCTAACAC 	
    170366	    28	 100.0	    32	............................	TGCCCAAGGCTTGAAATAACTTCGATATCCTG 	
    170306	    28	 100.0	    32	............................	AAGTCACCATCGTCATTAGCGATGTTGTCGGC 	
    170246	    28	  96.4	    32	...........T................	TTGACGGTTCAGGAACTCCACTTTCTTTTTAT 	
    170186	    28	  96.4	    32	...........T................	TCAAAAAGCGACGGAAGCAAGATGCCAGCTAC 	
    170126	    28	  96.4	    32	...........T................	CGGCGAAAAAGTCACCGGATGAAGTTTCACGA 	
    170066	    28	  96.4	    32	...........T................	TTGCGTTATTCTCGCCAATGACCTGGTAAAAA 	
    170006	    28	  96.4	    32	...........T................	GCAAGAGCTAATTTGAAAGCAACCATATAGTT 	
    169946	    28	  96.4	    32	...........T................	AGCTTAAACAGTACGTTTTTGCCTTTGACGTT 	
    169886	    28	 100.0	    32	............................	TCAAGGCCATGAGCAGAGCAATAGGGGTTTTC 	
    169826	    28	  92.9	     0	.........................TT.	|                                	
==========	======	======	======	============================	=================================	==================
        20	    28	  98.6	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                 	       

# Left flank :   GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGTTTTGATTGCTACGGCTTGAGTAGCAAAGCGAATGGACAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTGTAACAAGGTAAAAAGAAGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT
# Right flank :  GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   GTTCACTGCCGTACAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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