Array 1 8298-9104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMS010000021.1 Serratia marcescens strain A10 Contig_21_43.7525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8298 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 8358 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 8418 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 8478 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 8538 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 8598 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 8658 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 8718 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 8778 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 8839 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 8898 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 8958 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 9018 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 9078 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1418-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMS010000103.1 Serratia marcescens strain A10 Contig_103_69.6542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1417 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 1357 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 1297 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 1237 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 1177 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 1117 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 1057 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 997 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 937 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 877 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 817 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 757 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 697 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 637 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 577 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 517 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 457 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 397 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 337 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 277 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 217 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 157 28 96.4 0 ....................A....... | G,A,A [130,134,136] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //