Array 1 22041-22734 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAIRS010000031.1 [Ruminococcus] gnavus strain MSK.15.59 NODE_31_length_39195_cov_161.14, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     22041	    32	 100.0	    33	................................	CCTGATCCAGACCGATGAGGATCACCTGTCCAT   	
     22106	    32	 100.0	    35	................................	CAAAGGAGTACGATACCCTGCAGTATTCAAACAGT 	
     22173	    32	 100.0	    34	................................	TATGTGTTAATATAGAAAATGCAAGGAGGAAGCA  	
     22239	    32	 100.0	    34	................................	CGGAAGATTTTGTTACGGTGTAAGTAGCGACTTT  	
     22305	    32	 100.0	    33	................................	TACAACTGAAACAACTATAAAAAAACTTACAGA   	
     22370	    32	 100.0	    36	................................	CCGTAATGCATCTACTGAAACTCCACAGGCATTGCA	
     22438	    32	 100.0	    36	................................	ACAAATTTAATTCGCTCGGATGTGGTGTCTACTTCA	
     22506	    32	 100.0	    34	................................	CGTACAAACGGCAGGATTCGACCATCCTCCAGCT  	
     22572	    32	 100.0	    34	................................	GCGATATCATCTGCCATGCTACTGCCGCCGGAAT  	
     22638	    32	 100.0	    33	................................	CAGGCGGGACTTTCGGATAATTGGATCCATTAA   	
     22703	    31	  90.6	     0	........................-.G..T..	|                                   	T [22731]
==========	======	======	======	================================	====================================	==================
        11	    32	  99.1	    34	GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	                                    	       

# Left flank :   ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT
# Right flank :  TGTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATAC

# Questionable array : NO	 Score: 9.21
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.00,-5.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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