Array 1 135953-137000 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVBP01000011.1 Pseudomonas aeruginosa strain SCH_ABX09 ABX09_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135953 28 100.0 32 ............................ TTCCGGTCGTGTGCGACGTGTTTACGCTCACA 136013 28 100.0 32 ............................ TCCAGGTCATCCAGTTCATGCGCGGGGTCAGC 136073 28 100.0 32 ............................ GCTGCGTCCCTGGAGCGTCCAGGTCTTCGCCC 136133 28 100.0 32 ............................ TTGAACAGCACGAAGCCGTCGCCGCGCTCAAC 136193 28 100.0 32 ............................ ATCTTGCGCAGGGCGTAGACGCATACCAACCA 136253 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 136313 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 136373 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 136433 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 136493 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 136553 28 100.0 32 ............................ TGATGCCCGACATGGGTCGGTTCGCGGGAACC 136613 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 136673 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 136733 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 136793 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 136853 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 136913 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 136973 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 146513-145524 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVBP01000011.1 Pseudomonas aeruginosa strain SCH_ABX09 ABX09_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146512 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 146451 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 146391 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 146331 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 146271 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 146211 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 146151 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 146091 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 146031 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 145971 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 145911 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 145851 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 145791 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 145731 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 145671 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 145611 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 145551 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 347902-348949 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVBP01000004.1 Pseudomonas aeruginosa strain SCH_ABX09 ABX09_contig000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 347902 28 100.0 32 ............................ TTGCAGTCACCGTCGCCGGAGATCGAGGAGCC 347962 28 100.0 32 ............................ TGATCGCCGCCGCAGTCGTCGGCGGCGTCGGT 348022 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCTGAAGCCTA 348082 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 348142 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 348202 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 348262 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 348322 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 348382 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 348442 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 348502 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 348562 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 348622 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 348682 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 348742 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 348802 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 348862 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 348922 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //