Array 1 90607-89116 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPO01000002.1 Streptococcus cristatus strain A56 D8796_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 90606 32 100.0 34 ................................ ATGGGAGAGACTAGGTTTATTGAAAATCCAGAAG 90540 32 100.0 36 ................................ TTTGCCAAGCGCTTTTCCTTGTCTCTGGACATTCCT 90472 32 100.0 34 ................................ AATCATCATTGCGAATAACGGAAGTACCGTGACG 90406 32 100.0 34 ................................ TAATTTATGGGACGGCATTAAATCAGCCTTTACT 90340 32 100.0 34 ................................ AAAATGAGAAACAATATCAGAAATCTCAAAAACA 90274 32 100.0 34 ................................ CGATATCACCCAAAGTATCAACAATGAGCGCTTT 90208 32 100.0 34 ................................ AGTAAACTGTGGGACGGCATGAAGAAGCTAGCTC 90142 32 100.0 36 ................................ ATGCCATCGCTCCACCCCACAGTAGAAACCCCTGTC 90074 32 100.0 34 ................................ ATACTTTTTGTGACATGGGTGTAGATTTGCATGG 90008 32 100.0 34 ................................ GCGTTATCAGCGATTGTCTTGAATGATGCAGCAA 89942 32 100.0 36 ................................ ACAATCTTCATTATGAAAAACTAAAGCATTCATCTT 89874 32 100.0 33 ................................ AAAAGCTGCCAGCCAAAAATAGCCTGCAGCAAA 89809 32 100.0 35 ................................ AAGCATACTGTCCGCTATGTTTGGGGGAATAAGAC 89742 32 100.0 34 ................................ TCAGTTGCTCTCGGTGTCGCCGTCTGCGCCTTTC 89676 32 100.0 35 ................................ TTAGGTTCATCATAGCCTAGGGCTCGCTGGCTATC 89609 32 100.0 34 ................................ ACCAGCACCAGCAGATACTGTACCGTGTGTTGTC 89543 32 100.0 34 ................................ ATACAGCGTTTGGAACTTCTAAAATAGAGGTGTC 89477 32 100.0 33 ................................ ATCAATCGCATTTTGAATAGATTCTGGTAAATC 89412 32 100.0 34 ................................ AGATAAATAATTGTGTGTGTGTCACCGCCAGCGA 89346 32 100.0 34 ................................ AATGAGTGATTGAAAAGTAAATACGATGTACCCG 89280 32 100.0 37 ................................ AAAAATTAGGATGCAGATACGTCTCTGGACCCTGAAG 89211 32 87.5 33 A......T......A..A.............. GGATAAACTGATAAAGTTTATTTGATTTTTTAA 89146 31 84.4 0 .......T........A..........-..GC | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.8 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : CCAAGACAATTCGTGGAGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGGTTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCCGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTGATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATGGATGTTACTCAGAAAAAAGCAGGACTTTCGCGCAAAAAATAAACAAAAATAAGGCAAAAATTCGAAATTCTAGAAGAGTTTACTTTCCTCGAAAGATAATTTTTGCCTAAAACAGTGCAACTACGCGCT # Right flank : ATTGGCTGACAGACTTGTTGTCTGTCGCTCCCTCCCAGAATGTGTTTTTTCATGAAGCCATTGTAGTTAACAAAGATCTAACTTCTACTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAATTTATGAACACGAACTATATCCAGATTATCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGACACGAAGCTCCCCATAGTCAAATAAATCCGATTCTTGAAAGGAGAGTCGGATTTTAGTTTTGTTTGATTTCGATTTTTGTGCTATAAATTTTTTGCAATATCTGCTTGTATTTTCCTGAGATTCTGCTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAGCTATATTTTGGAAATTTTACCTAGTCTTCTAAGTGGAGCAGCAACTACCTTGCAGGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 142944-143838 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPO01000004.1 Streptococcus cristatus strain A56 D8796_contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 142944 36 100.0 30 .................................... AATCATAAAAAATAATCATATGTCTCATTC 143010 36 100.0 30 .................................... ATTTAGGCGTATAAGGGCCGAAGTAGTTCA 143076 36 100.0 30 .................................... TGTTTCTCAAAACAGAGTCAGCGACATTGA 143142 36 100.0 30 .................................... AGTGTTGTCATAAAATCAATAACATCAAGA 143208 36 100.0 30 .................................... GGAGGAGACTATGGCACAGCGGAGGATGTT 143274 36 100.0 30 .................................... CCTGTTCTTTACTCATAAAGTTTTGGTTCC 143340 36 100.0 30 .................................... TTTTCTCCCGTAAATCTTCATTCTCGGATT 143406 36 100.0 30 .................................... TAAATTTATTGATTTTATGATCGCTGAATA 143472 36 100.0 30 .................................... TACGTGAAGTAGATGTTTCTTAAATCATTC 143538 36 100.0 30 .................................... AAACTGTTCCTTTTACAGCCAATGATCCAG 143604 36 100.0 30 .................................... GATTTCTCAGGATTCTATATTGCTTTCAGA 143670 36 100.0 30 .................................... CCACATCAGAAATAATCCCTTTTTTCTTTT 143736 36 100.0 31 .................................... CATCTTGCCTTGCGTGTTGACTGTAGCTTTT 143803 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTACCAATCTTTTGTAAAGTGTTGCAAACGCCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTGATATCTTTTCCTTCAAATGAAGGCTATCTTCATATCAACAGAGAAAATATGGAATTTGTTAATATTATTTCTGGTTTTATAGAGCATTACTATGAATTTCGGTTTATGTATGAAAGTTTTGTACAACGTTATCCATCCAACGAGATTCCCAATGAAGAAGAATTTTTAATTTCCTTGCAAAAAATTTCTCCTTATTTATTTAGCTCTGATGTGGAGCATATGAGTCTTTCGATTTATGATATGGTCACTTTAAAAATTATGAATAGCTTATACCAATATGATAAAATTATTGATTTTAAAGTACAGATGGCTAATCCATTATTAACAAATTTTTTAAAATATTAGACTTGACAAGCTTTTGGGGAGAATCTATAATCAGTATGAGAGTACAAAAAGCAAAAATTTTTAATTTGAG # Right flank : CAGAAGAAAACTAAGCGGGCTTGGTACTGGTCTCATAAAATTGATTTTTATCTTGACAAACTTATTACTGGGAACAAGCAATGTTGTAGATGGTTCTGGAAGAATTCGAAAGTTAAGATTAGAAGGAAAAGTAATTATGGAAAATTCAAACCAAATATCCCAATGTCAGACTCTTTGGGCTAAAAATAAGTATCTGGTGCTCAGTCATTCCAGTAAGATCTATCTGGAAATCCGTCAGTATCTGAAAAGCGATTTGGTGGAAGCAGCACATGTTCAAGACTTGATTGATCAGGCGGTAGCCCTGCCTGAAAATCGCGGTCAGGTCTGCAATGCCTTTCAGCATGTTTGGGGCTATTTTAAGAAAAAAGCCAGCCCAGCTGAAAAAGAAAACTTTATGCTATTTTTAGAGCGATACCAAGTAGGTCAGGTGAAGCAGGAGGTTTTGGTAGAAGCTGTGACAGATTTGCTTAGAAAGTACCCCAATCCCTATCTGCAACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //