Array 1 92505-91195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUTG010000015.1 Escherichia coli strain R1568 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92504 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 92443 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 92382 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 92321 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 92260 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 92199 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 92138 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 92077 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 92016 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 91955 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 91894 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 91833 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 91772 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 91711 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 91650 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 91589 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 91528 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 91467 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 91406 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 91345 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 91284 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 91223 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //