Array 1 2141-109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000009.1 Carbonactinospora thermoautotrophica strain UBT1 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2140 30 100.0 36 .............................. CGATCCAGCGGGGGGACGTCGAGGCGTACCTGAAGT 2074 30 100.0 37 .............................. CCTTCTATTTCAGCGTGCTCCCGCCCTATTTGGCGGA 2007 30 100.0 38 .............................. ATCATGGCCCGGATCTCCCGGGCACGATCGCGGCAGTC 1939 30 100.0 35 .............................. CCTTGATCTGCTCACGCATGGCTTGGTGCTGTCGG 1874 30 100.0 35 .............................. ACCGAGCGCTGCTCCAGGTCCTCGGCAACCGCGAG 1809 30 100.0 34 .............................. ACCAACGCCAGACGGCCGATCCGGCCGAGCTGGA 1745 30 100.0 36 .............................. GCCATGATCCCTAGCATTCGGCCAGCAAAACCCCGG 1679 30 100.0 38 .............................. TAGACGATGACCGCGCCTCCGCCTCGGTTCGCGAACCG 1611 30 100.0 37 .............................. GCAAGCGCCCTCGCCCACGCCTCATCGGTCTGCGAGA 1544 30 100.0 34 .............................. CCGTTGGTGACACTGCACCAACGTCAGTTTCCGA 1480 30 100.0 36 .............................. AGGACGTCCAGGCGGATGGGCGTGCCGGGTGTAGCG 1414 30 100.0 36 .............................. ACGTATACACCGGCGAGGGCGAGGACCGCCGGCAGG 1348 30 100.0 37 .............................. TCGGGTAGTCGATGACGTTGCCCTCGGTGACCTTGAC 1281 30 100.0 38 .............................. TTCATCCGGGGCGTCTACCAGAAGCCGGCGGACAACAC 1213 30 100.0 34 .............................. TTGCGGTACTGCTTGATCAGCTCGCTCGGGCCCT 1149 30 100.0 37 .............................. GTGAGGCGGGCGAGGTAGGCCGCAGTGGTGGTGGCGA 1082 30 100.0 38 .............................. ATGTGTGTGGGCGAGGGCAGGGCGTACTCGACACGGGT 1014 30 100.0 37 .............................. AGGTACTGAGGACCGACGTACCAGTCCTGGCCATCCC 947 30 100.0 37 .............................. CAGATACGGGTGATCGGTACGCCTAGGTCGTGCGCGT 880 30 100.0 37 .............................. ATGCCGAGTCGTACCGCGGGACCGAGGTCTGGGTCGG 813 30 100.0 38 .............................. ACTACACCACCGACATCGGGCGGGTGCGGCTGCTCATC 745 30 100.0 36 .............................. CGGCACTGGCCGGCCGGTTGACCCCCACGCGCCCAG 679 30 100.0 35 .............................. CGAACTTGACCGACACGAATCCGGCGCGTAGGCGG 614 30 100.0 37 .............................. CACGTCCACTGTGGGTGTGGACAGCCGGGTCAGATCG 547 30 100.0 38 .............................. TCAGCCTGGAGATGGCACGCGAGGAAATCCAGCACCGG 479 30 100.0 43 .............................. CCGGCACCCAGGACGCGGCGCATGTCCTCGGCGGCGGTGTTGT 406 30 100.0 37 .............................. CACGTCCACTGTGGGTGTGGACAGCCGGGTCAGATCG 339 30 100.0 36 .............................. TTGTGGCAGAACCAACAGCTGATCTGGCACTGAGGC 273 30 100.0 38 .............................. ACGTTGCGGCCGCGCGGGGTGTAGGCGACCGGCCACGG 205 30 100.0 37 .............................. AGTGGAACCCGTTCGCCAAGGCGCGCCGGCCGAAGGT 138 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 31 30 100.0 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGCCCCGGCCTCCGCGCGTCCCGGGCAGCCGCCGGGGCGCGCGAGATCCGGGCTGACAGGCGCACACCATAGGGCCGCCCACCGGCCCGCAGCACACGAGCCCCCGCTTCCTCGCACACGCGAGGGCGCGCGATCGCTCGGGCGCGCGTGCGCGCGCACGCGAGGACGCACGAGAAGCCAGCCGCGGTTCGAGAGGCGGACACGTACCAGGGCACGCCCACCCTGGACCAGCCCGGCGAATCCGGAACGACCAGGAACAGGGCCCGGCCCCCCGACCACGGACTACGATCAACTCACCCTTCCCGCCGGCCGCGCCCGCGACCCCCACCGGCACTGGCCCAGGCGAACCCGAACCCATCCTGTGAAGGATCCTGTAAAGGTGTCCGGCCACGCCGTTCTGCAGCGACACGCCGAGGCCGCGTGCACGACCGGCGGTCCGCTGCAAAACCACCCTCGTTCCACCGAGGGAAACAACCCCCGACCTCGGGCTTTACCCTCGG # Right flank : CGCCGGCGAGACGCGCACACGACGGCCCGGCACCGGGGGAGGGTGCTAACGGCCGCGGGGTGATCCAGGTGGGTGGCCACGTGGGTCCTGGTACGCGGTCATCGAGGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 77682-77449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000009.1 Carbonactinospora thermoautotrophica strain UBT1 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 77681 30 100.0 37 .............................. ACTTACTGCGACAGCACAAGTTGTCCCCGACCGTGGC 77614 30 100.0 38 .............................. CGGGACTGGTTGGTCCCGTAGGGGGTTGCCGTCGGTGT 77546 30 100.0 38 .............................. AGGCAGACATGCTCGCCGCTCAGGTGCTGTCGCGCCCA 77478 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CATCCGCTCCTGCCCGGCCGTGACCGGGATCCTCGTCTGGGGGAACCACAGGTCGCACTGGGCGACCTGGCCCGGCCCGTAGGTCACCCGGTCGACCGGGTCGATACCCAGGTACTCCGGCCGGATCAGCGCGAGCCGCTTGCGCAGCGGCGCCATCGAGTACGGCCAGCCGATCCGCTCGGCGATCACCGGGGCCGGCATCCTCGGCCACTCCTTGAGCAGGGCCCGCATCTGCGGCTCGAACGCGTCCGCGACCTGTCCGCGCGAGGCCCGCTCGTACTTCGGCGGCCGGTCCGAGTTCAACGCGGCCCGCACCGTGTTCCGGGCCACCCCCAGCCGACGCGCGATCTCCTTGATGGGCACGCCCTCCGCCCGATGCAACCGGCGTATCTCTGCCCAGTCCTCCACCTTCAGCACCCTCCAAGAGTTAGGAGGGGGTCAAGATTCGGAGACTGCCTGGGGGTCAGTTTTCAGGAAGCAACGACAGGGGGGCACCACCA # Right flank : GATCGCCGAGGGCGTGCTTGGACAACTCGCGCACCTACTCCTCGCTGGATGACCCGGCGCTTAGGGGAAATGCACTGGCGCCGTGGACTAGGGCGTGTCTTCAAAGGTGGGTGGCTCGTTGAGTCGGCCGTGGTGCGGCGTCATGAGTTGACCGATGCCGAGTGGGAGTTGATCGAGCCGTTGCTGCCGCGGCCGGCCACCGGCCGGCCGCGGGTCGACGACCGGCGGGTGCTCAACGGGATCATCTTCAAGATCCGTACCGGGGTGGCCTGGCGGGACCTGCCCGACCGCTACGGGCCCTGGCAGACCTGTGCGACCCGGTTCCGCCGCTGGGCCGCCGACGGCGCCTTCGCCCACCTGCTCACCCAGGTCCAGGCCCGGGCGGACGCGGCCGGGCTCCTCGACTGGCTGGTGGCCATCGACTCCACCATCGTGCGGGCTCACCAAAGCGCGGCCGGAGCCGGCGGGAAAGGGGGGATCCTGGCCGGGACGAACCGGAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 80675-79922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000009.1 Carbonactinospora thermoautotrophica strain UBT1 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 80674 30 100.0 37 .............................. GAGGTGACCGGGCGTGTATCGACCGACCGCTGACCGA 80607 30 100.0 37 .............................. CTTGCAGGTCGGCGGCCGCGTACAGCGCGCTGTCGAG 80540 30 100.0 34 .............................. ATGCCGGCCAGCGCGCCCACGGCGGGCAGTCCGG 80476 30 100.0 35 .............................. GCGATGCCGAGCCGGGATTTCAGCTCGGCCAGGGT 80411 30 100.0 36 .............................. ATCACGAACGCCTACGACCCCAGCGAGGACAGCGTC 80345 30 100.0 35 .............................. ACGTACACCTGGTGGTGCACGGGGAGCAGTGAGGC 80280 30 100.0 36 .............................. CTCATCTGGGTCTCCTCCTCAGGCGCGGACGGTGCT 80214 30 100.0 36 .............................. TGGCTGTCACCGGACAGGCTCTTGACCTTGCCCAGG 80148 30 100.0 34 .............................. AGGGCGGCGAGTACTGCCCCGGCAGCGGCCAGCT 80084 30 100.0 37 .............................. TCGCCGGCAACGCGCTGGACAGTCAGGACGCTCGCCG 80017 30 100.0 36 .............................. ACGGCCACTTCGGCGGCGCCCCGGTCTACCGCGAAC 79951 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : AGGTCTCCTACGACGAGCTACTGCACCTGGAAGCCCTCAAGCTCACCCGAGCCTGCCTGGAAGGCGAGCCCTACCGACCGTTCCGGATCTGGTGGTGAACCGTGTACGTCATCGTCGTCTACGACACCGCGGCCAAACGCAACCCCAAAGTGCTCAAGCTGTGCCGCAAGTACCTCCACCACATCCAACGCAGCGTCTTCGAAGGCCGACTCAGCGAAGCCCAACTCGTCAAGTTCCGCCACGAGATGGCCAGTTTGATCGACCACGGGTACGACCACGTCACGATCTACACCTTCCCCCCGGGCACCGCCCCGCAGCGCGTCCTTCTCGGCACCGGCCCGGGCGAACCCGAAACCATCCTGTGAAGGATCCTGTAAAGGTGCCCGGCCACGCCGTTCTGCAGCGACACGCCGGGGCCGCCTGCACGACCGGCGGTCCGCTGCAAAACCGCTCCCGTTCCACCGAGGGAAACAGCCCCCGACCTCGGGCTTTACCCTCGG # Right flank : CCACACACCAGATCGGCATCTGGGGGGTGTCAACGCTTCGCGAAAACTGACCCCCTTCCGCTCCGGGAAAATTGATCCCCTGGGGTCGGGTCAGTTGCGGCTGGCGCGGTTCTCCTTGGCCAGGAGCTCGCGTCGCTGGCGGGTGCGGTAGGAGTCGCCGGTAAGGGTGAGGACCTCGGCATGGTGGACCAGGCGGTCGATCATCGCGGCGGCCACGACGTCGTCGGAGAAGGTCTCTCCCCAGCGCCCGAAGGGCAGGTTCGAGGTGACCATGACCGAACCCTGCTCGTAGCGGGACGCGATGAGCTGGAAGAACAGGTTCGCGGCGTCTTGGTCGAAGGGGATGTAGCCAACCTCGTCGATGATGATCAGCTTGTAGCGGCGGATCTTCTTCAGCTCGGTCTCCAGGCGGCCGGCGTGGTGGGCGGCGGCGAGGCGGGCGATCCAGTTGCTGGCGGTATCGAACAGGACCGAGTAGCCAGCGCGGGCGGCCTTGACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 99782-100408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000009.1 Carbonactinospora thermoautotrophica strain UBT1 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 99782 30 100.0 38 .............................. GGGTCAGGTCCGCCAGCGCAACGGCCCGCCCTCATACC 99850 30 100.0 34 .............................. AGGCCTGTTCAACATGCTCGGCGCCATCCGCTAG 99914 30 100.0 38 .............................. GGGTCAGGTCCGCCAGCGCAACGGCCCGCCCTCATACC 99982 30 100.0 39 .............................. CGCGGTGAAGGCCGCGGTGAAGCGGGCCATCCCTCGGCA 100051 30 100.0 36 .............................. CATGGACTACAAGACGACACGGTCCGGCGTGCACAC 100117 30 100.0 36 .............................. TTGGGTATCACGCCTTCGCCCTCACGACACTGATCC 100183 30 100.0 34 .............................. CCGTGGTTAACCAGATCCGCATCCGCGCTTGGCT 100247 30 100.0 37 .............................. TTGCCCACCGCTCCACCACGTCGGCCCCAGCCGAGGT 100314 30 96.7 35 ............T................. CCCTCGGGCGGGTGGCACCTGCTGTACCGCGCCCC 100379 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.7 36 GTTGCGACCCCTCGTAGGGGCGATGAGGAC # Left flank : TCCACGCGTAGTAGCCCTGGCGCGACACACCCAGCACCCGGGCCAAGAGGGAGACGCCGTGGTGTGCCTTCTCCGCCTCGATCAGCCGGTACTTCATCTCGACCGATCCGTCTCCCGAGCGAAGAAAGCCGCGGCCTTGCGCAGGATCTCCCGCTCCTCACGCAGGACCTTCACCTCACGACGCAGCCGGGCCAACTCCTCCCGCTCGGCACTGGTCAGCCCCTCGCGGCGGCCCTCGTCGACGTCGGCCTGGCGCACCCAGTTACGGATCGCCTGCGCCGACGGCTCGAACTCCCGCGCCAACTCCTCCGGCGTGCGCCCCGAGCGCACCAGCTCGACCATCTGCCGGCGGAACTCCGGCGGATACGGTGGACGACTCCTCGGCACTGTGGACTCCTTCCAGGGACCATCGTCCCCAAGCGATCAGATGTCCACGAGACCGGGGCAAGTCCAGGGCGATGAGGACAGGCCTGTTCAACATGCTCGGCGCCATCCGCTAG # Right flank : CCCTCTGTCAACGGTCATTGAGATCTGCGGGTGGGTGGTCGTGAGGTGTCCGGGCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 73897-74778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000019.1 Carbonactinospora thermoautotrophica strain UBT1 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73897 29 96.6 32 ............................T GAGCAGGACCACGCGGGCGCCGTGCCGGCGGT 73958 29 96.6 32 ............................C GGGTGGAACGCGACCGCCCCGACCATTCCCCA 74019 29 100.0 32 ............................. CACTACCGGCGAATTCTGCAAAGGCGACGCCG 74080 29 96.6 32 ............................C CCGACTCTTGAACCTGAGCTTCTCGTGGTTGC 74141 29 100.0 32 ............................. GGAGTGGAAAAATGCCGATACTCATTCCGGAC 74202 29 100.0 32 ............................. GTTGAGCAGTGGCTTTCTGAATACGGAGATGT 74263 29 96.6 32 ............................C GACACCGACAACCCGGTCTGCGCGGACAGGCC 74324 29 100.0 32 ............................. GTCCTCTTCCAGGCCACCTTGTGGGGCCTGAC 74385 29 100.0 32 ............................. CTTTCGCTTGGAGTTCGCGCTGTACCAGTACT 74446 29 100.0 31 ............................. GCACGCCGCGATCGTGTCGTCATCGGCACCG 74506 29 93.1 32 ..............T.............C CGTACCCGCTGGTACGAGATGCGCTGCAAGGC 74567 29 100.0 32 ............................. TACAGCACCGGTCAGATCCTCGGTGCCCAGGG 74628 29 96.6 32 ............................C CATGAGGCAACCCACGAGCCGACCGCCGAGAT 74689 29 100.0 32 ............................. AAGGAGGGCTACTACAGCTCCTTTGACGGCAC 74750 29 86.2 0 ........................GCG.T | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.5 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : CTCTGGAGCCTGCCGACACCAAGACGATGGCGGTCGTCTTCGCGGACCTGGCTCTAGCCGAGGGCATGAAGGGGGAGATCGAGCCGGCGGTGGTTTTCGCGGAGCAGTCCTTGTCCATCACACACCGTCGAGGCGGTGGCGCTGTCGCCCGGCGTCGCCTGCGTGACCTCGACAAGCTCCTACCCGACGAACCCCGTGGCCCCGTGGCCGAGCTTCGCGAACGGCTCCGCGAACTCCGCGACGCCGCGTAGAAATCGCTGAGAGGGATTTCCGCCCACCAGCGGCGAGGAGGTCACCACTCACGTCGCCGCCCGCGCCTGGCGGTGGGCGTCCGAGATGCGCGAGGTGGCTCGGACGATGTGGTCGCGCGATAGAAGCTGTCGTTCGGCTGGGTGGGCGGCGCTGGTCTGGTACGGGATGTCGTTCCGTCTGGTGGAACGGAATCGGTGATCTCGCTGCGGATCTCGCGCGCGGGCGTTTAACATCGCAGGTCAGGAAGT # Right flank : TACAGCGGTCAGGGCATGTCTTCTGTGTCGAACCGCACGGTCTGAGAGCCGCTCAGCCCAGACGATGGACGGCCCCCGCCCGGGATGCATGGGTGTGCGAGCCGGACAGAAGCCGCACCGCTCCCAGTACCCAGCCACCCGGGAGCAAGAACACCCCCGACAGCACCCCCGGCCAGATGGTCACGCGGCCCGCCCCGATGCCCGAGCCGGTGCGTCCGGCTACAGCCCGGCTTCCTTCCACCAACGGTCGCCGCGAAACGCTTCAGGGATCTTGTCATGGTCCTCAATGGGGTCGATCCCGAGCTGTTCGACGCGGGCGTACCACTCGTCCCACAAGTCTTTCGGGAGCTTCGCACCACACCAGGGGCAGTACTCGATCTGACTGTACGAGATCCCGTCCCGATACCTGATGCCCCATTCGCGGGACTTCGGGATGTAGAGGAGATACAGGTCCTCGTCCGCGACGGCGTAAGCCATCTGGTCGCAGCACTGGTCGTGAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79877-82463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000019.1 Carbonactinospora thermoautotrophica strain UBT1 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79877 29 100.0 32 ............................. TACTTGGTCAGCGTCCTGCTGTTCGACTCCAG 79938 29 100.0 32 ............................. GACGCGGAGGTGATCCGGCGCAACCCGTGCGA 79999 29 96.6 32 ............................C ACCGTGTGCTGGCAGGTCGCCGGGGCGGGCAC 80060 29 100.0 32 ............................. CCGACCCCCGCCGAGCTGGCCGACCTGGTAGG 80121 29 100.0 31 ............................. CAATTGGGAGCCGCATCGGGGACAGGGAAGC 80181 29 100.0 32 ............................. TGACCCGGTTCAGGCTGGGCCAGTTGCGTCAC 80242 29 100.0 32 ............................. TTGTGTTCCCAATGCGGGACCCTGCAAGAGTC 80303 29 100.0 32 ............................. GAGGCGGGCATGTCGGCGATGACGGCGGTCCG 80364 29 96.6 32 ............................C CTCGCGGTGACCTGCAGCGTGGCACGCCGGGA 80425 29 100.0 32 ............................. CCACAGTTGAAGCTCCTGGCCGAGGCGCTTGG 80486 29 100.0 31 ............................. GCCATGAGCACGCCCGCGTTCAAGGCGGACA 80546 29 96.6 32 ............................T CAAACCGTGTCCGTGCCGGTCAACTGGATCGC 80607 29 100.0 32 ............................. TTGGTTGACGGCGTTCCGGTACAGGGACATCG 80668 29 100.0 32 ............................. ATCTCCAGCAGTGGCACGCCCTTGCGTGGCAT 80729 29 100.0 32 ............................. GCGAGTTCTGGGCGCTCGGTGCCCCGCGCGAG 80790 29 100.0 32 ............................. CCGATCGGGTACCTGTACGAGCCGCCGGGGAC 80851 29 100.0 32 ............................. TTCCCCCAGATCGGCGCGACCGTGTCCGGGCG 80912 29 100.0 32 ............................. TTCTTCCGGATCGAGCACGAGCAGATCTACGA 80973 29 100.0 32 ............................. ACGACCGAGAACGGGCTCGCGGCGGCGGCTGT 81034 29 100.0 32 ............................. GAGGCAACAGCACTACTTCGGTTCATGCGGGA 81095 29 100.0 32 ............................. ACGACCGAGAACGGGCTCGCGGCGGCGGCTGT 81156 29 100.0 32 ............................. CCGAGTACCAGCGCGCGGAGAAGCACAGGCAA 81217 29 100.0 31 ............................. TCGTAGCCGAGATCCGCCTTGAGGTACTTGC 81277 29 100.0 32 ............................. GTGGCCCAGATCGGCGCGACCGGCACCGGAGA 81338 29 100.0 32 ............................. GTGTCCCGCCCGGCCTGAGTCGACAGGAAGAA 81399 29 100.0 32 ............................. GCAACGATGGCCTTGCCGACCTCTACGGGGCT 81460 29 96.6 32 ............................C GAGCGGGGCAGGATGGCCGTGGATCTGGAACT 81521 29 100.0 32 ............................. CCGAACGGGCGTATCCCACCAGGGCGGGGCAG 81582 29 96.6 32 ............................C GTGGCCTCGTGCCGGGCGACGGCGGCGGCGTA 81643 29 96.6 32 ............................C GCCGGGCTGAACGTAATGGTGGCGCTGGTGGA 81704 29 96.6 32 ............................C TAGGAACAGGGAGGCATACGCGCGCGCACGCG 81765 29 96.6 32 ............................C GCGCCGCGCGGCGGCTCTCCCAGGCCGTACTG 81826 29 100.0 32 ............................. GCGTTGCGCGAGGCCGGAGCCAGCCTCCGCAC 81887 29 100.0 32 ............................. CCGTGACCGGATCCGGGCCGCCGTCGGCTTCG 81948 29 96.6 32 ............................C GCTACGGTGAACGCTGAAATAACCCCGGTCGT 82009 29 100.0 32 ............................. ATTCACCGGGTGGCCGTGTGGGTGGAGATCGG 82070 29 100.0 32 ............................. ATGTCGCCGGGAACGCCGGAGCGGAGCACGAC 82131 29 100.0 32 ............................. TCGTCGTTGATCAGCGTTTCCCAGCTCAACGC 82192 29 100.0 32 ............................. CCCAGACACACCGACCACACGAGCGAGCTGAA 82253 29 100.0 32 ............................. CCGAACGGGCGTATCCCACCAGGGCGGGGCAG 82314 29 96.6 32 ............................C GTGGCCTCGTGCCGGGCGACGGCGGCGGCGTA 82375 29 100.0 32 ............................. GCGACCCGGGCCGCGGTGAGGGCGTCGGCCTC 82436 28 75.9 0 ...A.-........T.........GCG.T | ========== ====== ====== ====== ============================= ================================ ================== 43 29 98.6 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : GTCCTTCCAGAAGGCGAGCCGGGCGCTCGCGGCGGTCGCGCACGCTCTCGCCGAGGACTACGGCGTCGCGGGCGAACTCCGGGCGGAAGCCCAGCGGATGCCGGGGGACATCCTGGCGGATGTCGGCTACCTTCCGAGCGTCGCCGCCCGCGCCTGGCGGTGGGCGCCGGAGATGCGCGAGGTGGCTCGGACGCTGCGGTCGTGCGGCCTGCCCGGCGACCTTGCCCTGGCCGCGGCCGTCGTGCTGGAGCGCTGGCAGGGGGACAAGGACAGGTTCGACCTGCCGCTGCCCGAGGTGTTCGCGCACCTGCACCAGGCGGGCTGAGCTGCCGAAGGAGCGTGAGTGCTCTGGCCTGCCTGTGCGGTACGTGCGGCTGAGTGCTGTCGTTCGGGTGGGCGGCGCTGGTCCGATGCGAGGTGTCGTTCTGTCTGGTGGAACGGAATCGGTGATGTCGCTGCGGATCTCGCGCGCGGCCGTCTAACATCGCAGCTCAGGAAGT # Right flank : TACAGCGGCCAGGAGATGTCTCCTGCGTCGCCGCGGCCCGAGCAGTCCCCGGGGTGAGCTGTCAGGCGGCCCGCTGCGATACCCGACGCGGTGTGTCCGGCTACAAGCCGGCTTCCTTCCACCAGCGGTCGCTGTGAAACGCCTCGGGGATCTTGTCACGGTCGTCCCAGGGGTCGAGCCCGAGCTGTTCGACGCGGGTACGCCATTCGTCCCACAGGTCACTCGGTAGCTTCCTGCCGCACCAAGGGCAGTATCTGATCTGTTTGAACGAGAGCTCGTCCCGGTGGTCGATGCCCCATTCGCGGTACTTCGGGAGGTAGCAGAGGTGCAGGCCCTCGTCCGCGATGGCGTCCGCCATCTGGTCGCAGCACTGGTCGTGATCCTTGCTAACAGTCATCGTCTCTGAGCTTTCGGTCGGCTGGCCCTTTGATCATCTCGCCGGTGTCCGGGTGGGCGCTGCCCAGATGCTTCCGTGTTTTTTGCTGTAGACCTCCAGGTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 170224-169950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000019.1 Carbonactinospora thermoautotrophica strain UBT1 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 170223 29 100.0 32 ............................. GAGCCCGGCAAGAGCGACGCGAACCCGGATGG 170162 29 96.6 32 ............................C GCGACGGTACTGTCGGACCTGCGGGCGTGGGC 170101 29 100.0 32 ............................. ATGGCCTCGTGCTTCGGGAGGTGGAAGTCGTC 170040 29 96.6 32 ............................A TACAAAGGCTGGGTGATCGACACGTGGGCGGC 169979 29 93.1 0 ...........A..T.............. | G [169957] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGTCCCCACGCGCGTGGGGGTGATCCG # Left flank : CCGAGGCAGCGCCCCACTTCTTGAGCATGCGCTCCAAGTGGACCGCGGTGAGCAGCCCGTGCGGGGTATCCGTGCGCCCTCCGCCCTTGAACCGGCTTACGTACCGGATGTCCTGCTCGGCCAACTCCCCCAGCAGCTCCACCGCCAAGTCATCGCGCAAGGCCTGAAATGCGGGCGAAAACTTCCCCAGGTCATGTAGCCCGCACAGCACCGCGGCCCAGCCGTCCGCGTCGCCGAGCGGCACGAACGCGGCTCGTAACTCCTCCCGGCAGCGTGGCCCCACCAGCACGCCCAGCAGCCGCTCGGCCACGGCCGCAGTGTCGATCGCATGGCATATCAGCGGGTGCGGAACCGGCTCGTTCTCCGCCTTCCCCCACGCGGCCCGCACGTCCGGCCGCGTGCCGTCCCCCGATTCGATCATGCGCCTCAGTCAAGCACCCGGCGGCGACACCGTCCCGGGAAATCAGCGATCAGGCGCGTAACATCCCAGGTCAGGAAGT # Right flank : GAAAACCCGCTCCGCGGCGTCCTGTGACCACGCCCGGCGGCCTCCTGTGGAAAGAAGCAGAGGCCCGGGTGAGTAGTCACCGGACCTTCGCAAGATACGGTTTCGCTGCCTACCGCTTCGACTTCGTCGTCTCGGCGGCGACGCTGGCCTTCTTGTGGTGGATCTGCGACACCCGCTGAGGTGACAAGCCGACCAGCACCGCGACGTCCCGCACTGACAAGCCACGCGCTCCCAGCTTGTCCACCAGGCCATAGGTGCGGCGCTCCACCTGCCGTTCGGTCTCGCTGAGTTTGCGGCGCCACGTCCGCACTTCAGCGGACTCGGAGTCCACGACCGGGTCACCAGTCCGGAACTCGTAGTCGAGTTCCAGGTCGTCCATCGCGTCGTCGGGCAGATCGGCACCGAGAACGATCGCCTCTCGTACGGCTCGGTCCAGGCTCGTCAGGTTTCGCGCCCAGGTGTGCGTGCCCTCCAGCTCAGGGACGTCGGCAAGCCAATCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCACGCGCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 906617-906913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000019.1 Carbonactinospora thermoautotrophica strain UBT1 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 906617 30 100.0 36 .............................. TGCCGTGTGGGTGGCGGCTGTGTACTTGTGACGCGC 906683 30 100.0 36 .............................. CCGCTGATGATGCCGCTGCAGGCGTAGGTGATCGTG 906749 30 100.0 38 .............................. ACCAGGTTGCCGCCGTTGCTGAACGCTAGGTTGCCCAG 906817 30 100.0 37 .............................. ACGGCGTCGTCGACGGCGGGGTGCGGGTGAGTGGTCG 906884 30 90.0 0 ...........................GGG | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : TGAGATCCTTTCCAGAGAACTTCAGAGCACAGCGGAAAGGCCCCCGACGCACCGGGGGCCTTTCCGCGTTTCGGAGAACTTCGGGACGATCAGAAGGGCGGCTCGTTACTCGTGGCGCCACCGGAGGTAGCCGCTGGCCCGCCAGAGCGAAGCCACCAGTCCTCGTCAGCGCCAGCCGGTACCGGCTGCGCCGTGCCCGCGCGGGTGGCCTTTCTGACCGCTGCGGTGGCCCAGCGCAGCGCCGGGCCGACCTCATCCACCTCGACCTCGAAGCTGGTCTGCTTGGACCCGTCAGGAGCGTCCCAGACCCGCTGGCGCAACCGGCCGACCACGATCACCCGCGCACCGCGAGTGAGGCTTTCGGCGACGTGTTCGGCGTACTGCCGCCAGACGGTGCAGCGCAGGAACAGCGGCTCCCCATCACGCCACTCGGACTGCGCCCGGTCGAACACGCGCGGGGTGGAGCCCAGCGGGTCCGGGCGGACCATGTTGACGATGAC # Right flank : GGCGAGGCCGCCGGCCGGCCTCCCCCTCGGCGTCTTCCCCACGCACGTGGGGGTGAGCGACTGACACCAGCCCCGACACCAACGAGGGCGGACCCGGCTACACGGTGGCGGATCTCGACGGAACCGAGACCCGCAGGTGAGAAGGCCGGGCACCCGAACGCGCGGGCTCGGCAGGCAAGGGATCGTGCCCGCTACGTGCCCGATCGGACGGCCGACCACGGCGAAGAACGGTCACTCACGGTCAAGCACGCCAGGAAGCGCCAGGTAGGCGAAGGCCCAGGTCAGACCAGAGGCACGCGATCAGCTTTGCAAGCAGTAGGTCAGCGGTCCGAATGTCGTCACCCCGGCTCGATCTCGCGGTGCCGGGGTGACGCTGCCGCTCCGCTTACGGTCCCCGGGCCGTTAGGTGCCCTGCGATCGGAGTAGCTTGCCACCAGTAATGCGGGCTGGCATAGGCGGTGGTCATGGCCCTGGTGGGAAGCGCTGGGTGAGCCAGGCTT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 1201050-1199312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000019.1 Carbonactinospora thermoautotrophica strain UBT1 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1201049 29 100.0 32 ............................. CGTTTTGTGAGTCCGTGGCCCTGACGATGCAC 1200988 29 100.0 32 ............................. TCGGCCATGCGCGGCCGCGCGGTGAGTTCGGC 1200927 29 96.6 32 ............................C GTCCTCGACGCGAACATCTACTACCTGAACGA 1200866 29 96.6 32 ............................C CAGCAGAGCCAACAGCAGGGCCGCGCCCGCCA 1200805 29 96.6 32 ............................C GAGTCCTTGTCGGGCCGCTGAGTGGCCAGGAT 1200744 29 100.0 32 ............................. TCCCGTTCCCGGACGGGGGTGATCCGCAGTGA 1200683 29 96.6 32 ............................C ACAAGCTCCGCTTCTTCGCAAACGGCGCGACC 1200622 29 100.0 32 ............................. CCGCGCGAGGGCCGGGACGACAACCCGAGCCT 1200561 29 100.0 32 ............................. TTCGCCATGATGGTTCTCGCTCCTTTCGTGGA 1200500 29 100.0 32 ............................. CCCACCTGTACGGGCTCGGCTGGGAAAACGCC 1200439 29 100.0 32 ............................. TTCCCACCCAATGCCTGACCGTCTGTGCCCCG 1200378 29 100.0 32 ............................. CCGTAGTGCCGGCGGCGGCACCGCTGACCCCG 1200317 29 100.0 32 ............................. GCCGACTCCAAACAAATGGTGGCCTGGTACGG 1200256 29 96.6 32 ............................C ACGCGATGGTGCACATCCGCCACAGCGACGAC 1200195 29 96.6 32 ............................A TTTCTCCCCGGCGCGAGAGGGGGAACGTTCGG 1200134 29 100.0 32 ............................. CGATACCCGCCACGTTGCGACCCCTCGTAGGG 1200073 29 100.0 32 ............................. CGCCTCCAGGCCGAGAAGGAGGCGGAGAAGGC 1200012 29 100.0 32 ............................. TGGGCGAGGTTATCCGGTTTAGGCGTCCGGGT 1199951 29 96.6 33 ............................C GACCTCGACCTCGACGCCATCGAACAGCGCGAG 1199889 29 100.0 32 ............................. CCCGAGCTTTGGCGCCCGCCGCCGGGCGCGCC 1199828 29 100.0 32 ............................. CCCCCGACCACGGGGGAAATCGGGGGCCTCGA 1199767 29 96.6 32 .......................C..... AGGTCGCTGAGCAGGTGGACCGGCTGCTGGCC 1199706 29 96.6 32 ............................C GTGCCGTCCGGTAGCTCGACCTGTCGCATCGC 1199645 29 96.6 32 ............................A TTTCTCCCCGGCGCGAGAGGGGGAACGTTCGG 1199584 29 96.6 32 ............................C ACTCCGATTCAGGGCTTGCCCTACCCGAGCCT 1199523 29 96.6 32 ............................C GCGCTGTCGGTGGCGATGTCCGAGCTGGTAAG 1199462 29 96.6 32 ............................C GTCCACCGACCAGCCGAGCTGTCCGGCGTTGG 1199401 29 100.0 32 ............................. TCGTACCCGAGATCGCTTCGCAGGTACTTGCC 1199340 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.4 32 GTCCTCCCCACGCACGTGGGGGTGAGTCG # Left flank : GCCGCCATCGACCAGAGCGGCGAACGCATCGGGATTGATGGTTTGAAAACCCGGGATCGCCTTGCCGATGTCGTGCAAGCCCGCCCACAACGCAACCAGCCGGGCTGCCTGCTCTTCGTCGGCCAAGCCCAACCCGTGGGTGATCCGGCGTCGCTGCCCTGGCGACAACACCAGATCCCACAGCGCCAGCACCACCGCCGCCACGTCCGCCAGATGGCAGACCAACGGGTACGGCCGCGGCAGACCGCGTGACTTCCCCCACAACAACCCATCTACGCCGAGCGCCATCCCCCCGGCCTCGCCGGACCGCAGGGCCCCCGGCACCTCATGCTGATCGAGCACGCCCCCCTACCTACAGAACCGCGCCGACAACCCAGGTCCTTTGCTTATCTCCTCATCACCCGAACGGAGTAGCAATGGACGTAAATACGACAACAGCCCAGACGACTCCTGGCTTCAAAATCCGCACCCGGGTCCTGTAAAGTCGCAGGTCAGAAAGG # Right flank : GGGAGACGGAGCGCTCTTGGCGTCTTGAACCGCCCGAGCGTTGGTCCGGAGAACCCAGGTTCTCCGGACCTCTCCTTGCTCCGTGGCACCCTCGCCGCCGGAACCATCCTCACCCATGACCGCCCGTACGGCAGCGAGGGCACCATAGCCCGAACACGCCGACTCTTCACATGGAGGAGGACCGGGCAGACACCGCTACGCTCGCGCCAGCCGCCCTGCCGCTGAAGTTAGGCGTTGGATCGCTGCGTCCGGCTACAGCTCGGCTTCCTTCCACCAACGATCCGTTTTCAGCTCCTCCGGGATCCTGTCTCGGTCCTCAAAAGGGTCGAGCCCGAGCTGTTCGACGCGGGCGTACCACTCGTCCCACAGGCCCTTCGGGAGCTTCGCACCACACCAGGGGCAGTACTCGATCCGACTGATCGAGACCCCGTCCCGGTAGTCGATGCCCCATCTGCGAGTCTTCGGGTGGTAGGAGATGAACAAGTCGGGATCTGCGATCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1210163-1211229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000019.1 Carbonactinospora thermoautotrophica strain UBT1 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1210163 29 100.0 32 ............................. TGGCTGAGAGCCACGGGCGGAAAGGGAGTCCA 1210224 29 100.0 32 ............................. CTGCACCAGGGCGCGAGCCTCGGCCACCTCGC 1210285 29 100.0 32 ............................. GCTGATTGTCCTGGTCAGAGCCCTCTTCCTGC 1210346 29 100.0 32 ............................. AACGCGCCGTCCAGCCAGCCCGAGCCGGGACC 1210407 29 100.0 32 ............................. GCAGCATGCGCCACGTCGGCCGCGGACGGATG 1210468 29 100.0 32 ............................. TAGTGGGCGAACCGCTGGCACTGCCTGGTGTT 1210529 29 100.0 32 ............................. CCCGAGCTGCGGGAGGAGTACACCGATCTTGC 1210590 29 100.0 32 ............................. AGCGTGTGAAAGCCGAGGCCGGGGTCATCCGC 1210651 29 100.0 32 ............................. TAACCCAGTTGCTCATGCTCTGCGATGTAGAC 1210712 29 100.0 32 ............................. TCGGCGAGTGGCGGGAGGGTGACGTATGGGCC 1210773 29 96.6 32 ............................C GTGGAGGCCGAGGAGCTGGAGGACACCGCGAT 1210834 29 96.6 32 ............................C TTGCCCAGAGCTCACAACCCGGGCGCCCGGTA 1210895 29 96.6 32 ............................C CAGCAGGTCGCGCCCATCGCGTCGTAGGCGGC 1210956 29 100.0 32 ............................. TCCAGCAGGCGGTTCTGGTTGCGCCGGTGGTG 1211017 29 96.6 32 ...C......................... TCCACCCCTAGCATGCCGGTGATCTGGACCTT 1211078 29 96.6 32 ..............T.............. AAGTGGCGCTGTACGGCGTCCTTGGGTGAGCA 1211139 29 96.6 32 ...C......................... TCCAGGAGGACGCCATGACCGCTGTCGCGCAC 1211200 29 89.7 0 ...C.......................TC | A [1211224] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 32 GTCTTCCCCACACGCGTGGGGGTGAGTCG # Left flank : ACTACGGCAACGAGCCAGCCGACCTCGAGGAAAGCCCATGGTGACCAACCGACCTGGAGGGGACTGCCGGTGCCGTCCATGATGGTCCTCGCAGTGACCGCGGTCCCACCCCACGTCCGCGGCGCGCTCAGCCGATGGCTCGTCGAAGCAGCACCCGGCCTCTACGTCGGGTGCGTCTCCGGCCGCGTCCGTGAGGAACTGTGGACCACCGTCAGCGCAGTCATCGGCGACGGTGCCGCCGTCTGCGTTCACCCCGCCGACACCGAACAAGGCTACGAGCTGCGCACTGCCGGAACCCGGCGCCGCGAACCCATCGACCTCGACGGCCTCACCCTCATCCGCTTCCGAGCCCCCGAACAACCCACGAGCACATCCGAACCGGAGTTCCCGTGGTAGCGACCCTGAAGAAACGAAAACACCCTCGCCCCAGCCCCACCCTGCCCGACCGTGCCGACCCCAAAATCCGACACCAGCCGCGGTAACATCGCAGGTCAGGAAGT # Right flank : CCCCCGCTGATGTGGACATCCTGAGACTGGATCTCGGGGGAAGCCCAGGGTATAGCCGATGCACCCGGGTTGACACCCCGGTTCACGACGGGACGTGAACCGGACGGCGCGCATACGCTCGCTGCGTGATCACTGCCTACGTGGACGAGTCGGCGGCCCTGGAGCTGGGGTGCTACCTGCTCGCGGCTGTGGTCGTCGACGATGCCGACGTCGAGCACGCGCGCACGGCGATGCGTGCCCTTCAGGTCGGCACCGGCAAGTTGCACTGGCACACCGAGGGGCCGGAGCGCCGGCTCAAGATCGTTTCCGAGGTCGCGGCGTTGGGGCACCTCTCGGTGGTCGTGGTCGGCCACGGCGTCGGGCGGCGGCAGGAACGCGGGCGCCGCAAGTGCCTGGAGGTGCTGCTGCCCGAGCTCGCCACCCTCGGGGTCGCCCGGGCGGTGTTCGAGACCCGCGCGGCCTACGACCGGCAGGACCAGGCGATGATCGCCGCCTGCCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 719681-718677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000017.1 Carbonactinospora thermoautotrophica strain UBT1 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 719680 28 100.0 33 ............................ GGTATGAGGTGTAGTGATCCCAGAAGACTAGCC 719619 28 100.0 33 ............................ GCTGGACGCCGCCGCGCTGTTCGGTGTCGACAA 719558 28 100.0 33 ............................ GGACGGCGCGGCTACCACGCCCCCGGCTGCCAG 719497 28 100.0 33 ............................ GGGGAACGGCTGCCACAGGTCCCACCGGTCGGC 719436 28 100.0 33 ............................ GCAGATGGGCTCGGTGTGGGCACGTCGCGTCGC 719375 28 100.0 33 ............................ GCCAGCGCCGGCACCGCCACCGGAGTCGGCGCG 719314 28 100.0 33 ............................ GACCTGGAGAACCTGGAGCGCCGGGCGGGCCGT 719253 28 100.0 33 ............................ CTCACCGAGGTGGATCGGCCCGTGGGCGCGGTC 719192 28 100.0 33 ............................ GAACTCGCTCTTGCCAGCGCCGGTGACGCCCAT 719131 28 100.0 33 ............................ GCTGCGCCAGGCGAGCGGAGGCCAGTCGTGACA 719070 28 100.0 33 ............................ GATGCTCAAGCTGTGCCGACAGTTGGGATGGAA 719009 28 100.0 33 ............................ GCCGTACTGGACTCCCTCGATTGGGATCGAGGT 718948 28 100.0 33 ............................ CACCAGGCCCTGCTCCGTCTGCGCGACCTCCCG 718887 28 100.0 33 ............................ GCGTTCCATGAAGCGGCCCGCACGGTCGCCCCC 718826 28 100.0 33 ............................ AGCCGCCGGCGCCTGGATCCACGGCCACGTCCG 718765 28 96.4 33 ................C........... CCGACTTGCGAGCGGCCGGTAACCGGGGTCCAG 718704 28 92.9 0 ......T..G.................. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 33 GTCTTCCCCACGCACGTGGGGGTGATCC # Left flank : AACTAGGGGTCCTCGCACTCGGGGCAGACGGCCGGCGCGGTCCACAACCGCCCGACAGGGCATAGAAACTCGCTGTCACCGCCGTCCACGGGCACGTGGTCGAGCGCGTCCACAACCGCCCGACAGGGCATAGAAACGGCTCGGGGTTGTCGGGGATCATCCCGAGTACTTCCGGTCCACAACCGCCCGACAGGGCATAGAAACGTCGGCAACCGGCCCGCGTACGCCTGATAAGCCTTGTCCACAACCGCCCGACAGGGCATAGAAACCGGGCGGCGGCTTTGGGCATGACGCGGACCTCGCCGTGTCCACAACCGCCCGACAGGGCATCCAGGTACAGCAACAGGTGCAGCAACAGCGACGAACAACGGCGATCACAGGTAGTCACCCGCAGCCAGTTCGAGCGCATGCCGAGGCCGCTTGTCTGGCCCGTGCCTGTGCCTGGGGGTCAAGGGGTTGCGAAACTGCGAGAGGCGCTGCAAAGCTGCTGGTCACGAAGT # Right flank : GCGAAAACCACCTCTGGCCAGCGGCTTTACCCTCGGGGTCCTCATCGCCCCCGCAAGAGATCGCAACCGGGCGATCGAGCGGGGAGCGTGGAGGAAACCGAACGAGCGTAGCGAGTGAGGTTTTCCGTAACGCTCACCACAGCTCGCTCTCCTCTGGCTCTCCTCTGGTCCTCATCATGGGCCTTACGAGGGAAGCGACCGCGCAACGGCAACGGCGACATACGCTGACCGCGCAGACGAGAGAGTCCCGGCCACGATGGCCGGGGCTTCGTCACAAGCGCGCATGTCGAATACGGTCAGAAGTTCCTGTCTGAACCGAGAAGGGCCAGGTCGGCGGCATGATCAGCGCGGTCTGTAAAACCGTCGGCGAAAGCCTACGCAGGTTCGAATCCTGCACCTGCCACCAGGGGCACCACCCAGCAAAGACGCAGCTCAGGGCCGGCCCCCGGCGAGTCCGGGGGCCGGCCCTGAGGCGTCTTCGGGTCACGGCCGTCACCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 720599-719843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIJ01000017.1 Carbonactinospora thermoautotrophica strain UBT1 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 720598 30 100.0 37 .............................. GCGCTGATTGCGTTGTCTGAGCGGTCCTCCGGCACGA 720531 30 100.0 34 .............................. CGCTTGCCGAGCCAGGCACGGACGGTCATGCGGT 720467 30 100.0 35 .............................. ACGTAGTCATGGCAGCCGCGGCACAACAGGACGAG 720402 30 100.0 33 .............................. TCGCCGACGCGAGGGACGACAACCCGTCCCGGA 720339 30 100.0 33 .............................. TATTCGGCATGCTGGCAGGCGGTGAGCAGGCCG 720276 30 100.0 39 .............................. CCATCCGGGTGAGGCCGCGTACTCGTCACACAGCTCCAG 720207 30 100.0 36 .............................. TAGGGGTCCTCGCACTCGGGGCAGACGGCCGGCGCG 720141 30 100.0 38 .............................. TCGCTGTCACCGCCGTCCACGGGCACGTGGTCGAGCGC 720073 30 100.0 37 .............................. GGCTCGGGGTTGTCGGGGATCATCCCGAGTACTTCCG 720006 30 100.0 35 .............................. GTCGGCAACCGGCCCGCGTACGCCTGATAAGCCTT 719941 30 100.0 37 .............................. CGGGCGGCGGCTTTGGGCATGACGCGGACCTCGCCGT 719874 30 93.3 0 ..........................GT.. | CC [719849] ========== ====== ====== ====== ============================== ======================================= ================== 12 30 99.4 36 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : GGTGGACACTCAAGCGCGGCCACGAATACGTCCTGAAGCACGCACCCGGCGAGAACAACGCCGAGGCCCCGCTCCGCGCGTGCCGCATGGTCGTCTACGAACTCGCCGCCCCCACCCCGTAGGACGAGCCGGTGCCCTGAACCCCGCCGCAAAAACTGCACCCACCCGACAGTCGATCTTCAGGGCCGCCGCCTCCGCGTCAAGGCCAAGCCGCTTCGCGGTCGGCCTTACGGCCGAGCCTTGACGCTCCGGCTCTGGCCCTACGATGCGGCACCTGTCGGGTGGGCGGCTCAGAGTGGCAGCGGCTCGCGTCCGATTTGCGAAGCTTGTTCTATCGGGTGTGCGGGTACGGCGGCCCTGTTGTCGAGGCCGAGCACAACCGAGCAGACTGCCCCGTGTGCAGCGACACGCCGACCCCTGATGCACGACCGGAGGTTCACTGCACATCCGAGCACGACCTAGCCCGGTGGACACGTCCCCACCTGCGGCTTTACCATCGG # Right flank : AGCAACAGGTGCAGCAACAGCGACGAACAACGGCGATCACAGGTAGTCACCCGCAGCCAGTTCGAGCGCATGCCGAGGCCGCTTGTCTGGCCCGTGCCTGTGCCTGGGGGTCAAGGGGTTGCGAAACTGCGAGAGGCGCTGCAAAGCTGCTGGTCACGAAGTGTCTTCCCCACGCACGTGGGGGTGATCCGGTATGAGGTGTAGTGATCCCAGAAGACTAGCCGTCTTCCCCACGCACGTGGGGGTGATCCGCTGGACGCCGCCGCGCTGTTCGGTGTCGACAAGTCTTCCCCACGCACGTGGGGGTGATCCGGACGGCGCGGCTACCACGCCCCCGGCTGCCAGGTCTTCCCCACGCACGTGGGGGTGATCCGGGGAACGGCTGCCACAGGTCCCACCGGTCGGCGTCTTCCCCACGCACGTGGGGGTGATCCGCAGATGGGCTCGGTGTGGGCACGTCGCGTCGCGTCTTCCCCACGCACGTGGGGGTGATCCGCCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //