Array 1 18224-16737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRI01000015.1 Neisseria meningitidis strain Nm340562 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18223 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18157 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18091 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18025 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17959 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17893 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17827 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17761 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17695 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17629 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 17563 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17497 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17431 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17365 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17299 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17233 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17167 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17102 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17036 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16970 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16904 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16838 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16772 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //