Array 1 1189812-1189364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADCYS010000001.1 Acinetobacter baumannii strain PBIO721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1189811 28 100.0 32 ............................ TTCTGCTCCAGCAACTCAGACTGTTTCAATTT 1189751 28 100.0 32 ............................ ACAAGAGCTTTTAGGCCGCAACTTGTCATTCA 1189691 28 100.0 32 ............................ TTTAAGGCAAACTCATTTCTAACTTGTTTATT 1189631 28 100.0 32 ............................ TATGTCTATTAATGATGTGCGTAGGTTGTTTG 1189571 28 100.0 32 ............................ AATGCTGTTCCCGGCACCTTGGCGGCGAGACT 1189511 28 100.0 32 ............................ GGATAAACATCGGCCGTATAGTCGAATGTAGG 1189451 28 100.0 32 ............................ ACTAATACCTTCATCACTGTAAATATGAAGTA 1189391 28 89.3 0 ...G........G...........A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : CGACTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGTATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGCTTACTTAAACGAATTCCACCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGGAAAATGAAAGTGTTGAAGTAGAGATCCGCGACAAATTAAGTCGTAGAGACAATTGGATCAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTAAAATAGAAAAATTAATATAATTCAATGGATTATGTTTTTTTATGTTTTGAAGGTTTTTGATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTCCCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATTACATTCAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTGGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTATTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAAGCTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1194898-1198224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADCYS010000001.1 Acinetobacter baumannii strain PBIO721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1194898 28 100.0 32 ............................ TACACTATCCCGATTATTTGGCTTGCCATTTA 1194958 28 100.0 32 ............................ TCAGATCCCAGCATTTTTAATCAAGGGTCATA 1195018 28 100.0 32 ............................ ATTTCAGCTAAAGACCCCGATCCACATGACAC 1195078 28 100.0 32 ............................ TGTCATATAATTCATCGTCTGACCTTGGATTG 1195138 28 100.0 32 ............................ ACATAGGGCAGCCATTGTTTCTCATAGCTTGG 1195198 28 100.0 32 ............................ ACATAGGGCAGCCATTGTTTCTCATAGCTTGG 1195258 28 100.0 32 ............................ GCCAAATAGATTTGCTCATTTGCTCGATCAAT 1195318 28 100.0 32 ............................ AAGATCAGTCATCAGGTAAAACAATTGAGTTC 1195378 28 100.0 32 ............................ AATACCTTAACTTCAGGTGATCAAACTAATCC 1195438 28 100.0 32 ............................ ATTAGAACCTTGATAACCATTTTTATTAGTAC 1195498 28 100.0 32 ............................ AAATCTGCTACAGCTTCAAGAAGTGATATAGC 1195558 28 100.0 32 ............................ ATGCTGTGAATGGCAACTGAAAGTCACCAAAT 1195618 28 100.0 32 ............................ AAAAAGTCATATTACACACGTATTACGAATGA 1195678 28 100.0 32 ............................ TCACATGTCAGATGGATATTTTTTATGTTCAT 1195738 28 100.0 32 ............................ ACAAAGTTATATCAAGAGCGCATTAAAGCGAA 1195798 28 100.0 32 ............................ TTTCATGTATAAAGCGTTAAGTGCTGCGTCGG 1195858 28 100.0 32 ............................ AATGTATTAAGTGGGGCCGCTTCCCAACTGAT 1195918 28 100.0 32 ............................ GGATGTAATGAGCGTCGATTAAATCGTGAGCT 1195978 28 100.0 32 ............................ TTTGATGAAAGTAAGTCCGTTTATAAGGCTGT 1196038 28 100.0 32 ............................ TAAGTTAGTCCACTTTAAAGCGTTATGATCAG 1196098 28 100.0 32 ............................ TGATAAGGCTTATATTTCGCGTCACATGACTA 1196158 28 100.0 32 ............................ ACAACCTGTAGGCGGTCTATTGCAATAAGTAG 1196218 28 100.0 32 ............................ ACTCAACATATCTTCCTGAACAATCCGCTGTA 1196278 28 100.0 32 ............................ ACATTACGCCGTATTGCAACAGGAACAATGCG 1196338 28 89.3 32 ...GC.......C............... TTCATAAAAACATTTAGCATCTCTTGGTCAAT 1196398 28 89.3 32 ...GC.......C............... ATTAGCGCATAAGTTCTATATGCCTTATTCCC 1196458 28 85.7 32 ...GC.......C.......C....... ATAGCAGCAGCAATACCTGCACTTAAGTCTTT 1196518 28 85.7 32 ...TC.......GT.............. TGGCCTAAATGATTCAGGGAATGATGAGATTT 1196578 28 96.4 29 .............T.............. TTGGACATCAAGAAAGTCCGTCTATCCAC 1196635 28 85.7 32 AG..........C.........G..... CTTCATTAAAGAAGTTCATATTTTTTAATTTT C [1196638] 1196696 28 89.3 32 ...TC........T.............. AAAAGAAAGACGAAAACGGTAAACCATTATTG 1196756 28 89.3 32 ...GC.......C............... ACCGATATCAATAGCTGTTTGAACTTGATGCC 1196816 28 85.7 32 C..GC.......C............... ATATCGAGAGCTTTGTCGATATAGTCCTGCGC 1196876 28 85.7 32 ...GC.......TT.............. ACGTCTTCTAATGATGGACTTTAATCCAATAT 1196936 28 89.3 31 A..G........T............... ATCTCACTCAAGATATGACCATCACTTTCTT 1196995 28 89.3 32 CG..........C............... TTTATAACCACCAGTTAAAGTATTGACTAAAA C [1196998] 1197056 28 78.6 32 ...GC.G...A....AT........... ACAATCGGGGACGTGGTCAAAAAGATTATCAG 1197116 28 92.9 32 ....A........T.............. TTATTCAAATCTATCATGCTGCCACCTTCGCT 1197176 28 89.3 32 ...GC........T.............. GTTGCTTTAAGAAAGATTGGATATGCCAAAGG 1197236 28 100.0 32 ............................ AAACTAGGGTTAGGCTGCATGGGTTCCACACG 1197296 28 100.0 32 ............................ TCAGTAACATAAGAGCCAAGTATCTTGTGAAA 1197356 28 100.0 32 ............................ AGCTTTAAGACAGTCAATCGTCTTTGCTAACA 1197416 28 100.0 32 ............................ TTAACTTTAACTGAACTCATATAGCACCTTTT 1197476 28 100.0 32 ............................ TAAGTGATGGCACATATCACCATGCAGTGTTC 1197536 28 100.0 32 ............................ TCAACGGCAAATTTTGGTCTGTATTTGTATTT 1197596 28 89.3 32 ...GC.......C............... CGTGACCGTTCGCGCCAATCCAGCCAGCAACA 1197656 28 89.3 32 ...GT.......C............... TAATAGAATCTTTTTAATATCATCCATATGTT 1197716 28 100.0 32 ............................ ATAAAAAAGCCTGTTAATTGAGGTTTTAATTC 1197776 28 89.3 33 ...AC.......C............... TGACTGCAATTTCAAAGTTGCTCTTGCTTTCAT 1197837 27 85.7 32 T...-.......GT.............. TGCATAGTCAGTAATGATCATATCTAGCGTAT 1197896 28 85.7 32 ...GC.....A.C............... TTATTCAAATCTGTCATGCTGCCACCTTCATT 1197956 28 85.7 33 ...GT.......C...........C... CATCACATTTAACCGTTGTGCAAGCTGGGGGGC 1198017 28 89.3 32 ...AC.......C............... TTACGTAGGATTGCCAAGATATCGGAGGCATT 1198077 28 85.7 32 ...AC.......TT.............. CAAACCTCTGAAACATCAATCAAAGAAAAATA 1198137 28 89.3 32 ...TC.......C............... TATTGATATTCAACATAGATATCCACATATTT 1198197 28 89.3 0 ............C...........AT.. | ========== ====== ====== ====== ============================ ================================= ================== 56 28 94.6 32 GTTCGTCATCGCACAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACATTATACAAGCAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCATGACACTATTGCTGATATAGCTAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCATGGTAAAACACGTCGTGGAGGCCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTGATGCCTATCGCTTTTATATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATATATTTAATCCAAGTACCTCATGACGAAGTATTTTCACTCATTAAAAACTTATATAGTTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTAAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGTCAATTGAACTCAAATTCTAAGATATTGATTTATTTAACAATAAAGTCAATAACATTTTACCTGTACCCACTTTTCACCCAAATAAGATTTAGTACGTTGAATCACAAAATAGATTGTCAGAATTATCCTATTTGTAAGCTTTCTAACATTGTCTGCAACCCAAACTAACTTTTAAAATCATCCACCACACGTACGATACAATTTGGATAACGTTCAAAGAATATTTTACTTAAGGTACGACCCAACTTCCAAGACGATATTAAGCTGATTTTCTTGAATTGCATCTAAACAAGCATCCTAGTCAATCGCATGACTCAGACGTTTATATTCCAAATAAAGGATGAGTTGATGGTCTTTGATGTATTCTCAATCACATTAAAGACCATAATATAAATATGAAGTCTATAATATACTTCTAAACTCCCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCACAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //