Array 1 1-964 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLHS01000021.1 Rodentibacter sp. Ppn85 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1 31 96.9 34 -............................... AACATAATCAAATTGATGTGGAGCAGCAGAAAAT 66 32 100.0 37 ................................ CTTTAAAATGCTTTCCATGTGCTTATCTTTTACATCC 135 32 100.0 34 ................................ ATCCTTTTGTTGATGGCAACGGTCGCACCGGGCG 201 32 100.0 36 ................................ GACTTTACTAGACATAATTGCACCCAACCGTAATAG 269 32 100.0 34 ................................ ATTGTTAGGGGGCTGAAAAGAAGTGCATGTTTAT 335 32 100.0 35 ................................ GTGGCGACCCATCCGGAATATAAAAATAGAAGTAA 402 32 100.0 35 ................................ CTTTACTCGCCCCTGCTGATTTTTCCGCTTGGGCT 469 32 100.0 34 ................................ AAGATAAGGGGCTGTTGTAATGTATTATGTTTAT 535 32 100.0 35 ................................ TAAGGGAGGTGTATATTTAAAGCCTGAGTATGCTG 602 32 100.0 34 ................................ CAACCAACAACAAAATGTTTAATTGCTACGTAGT 668 32 100.0 34 ................................ CTAATTGTAGGCACATCAAAAAGTAATTGCAAGT 734 32 100.0 34 ................................ CGCTATATCTAATCGACCGCCTAACGTTGCATAA 800 32 100.0 35 ................................ AAAGATGCCTATGAATCTTTTGAAAATGCGGTGAT 867 32 100.0 35 ................................ TTTTTATTTGATGGTGAACTGGAAAAGGTAAATCT 934 31 81.2 0 .....T........A...T..A.....-...T | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 98.5 35 GCAGCCGCCTTCAGGCGGCTGTGTATTGAAAC # Left flank : | # Right flank : TGATTATAGGCCTTTCGTTTAAAACTATAGTTAACGCTAGATTCGCTTACAAATAATGTCTATAATAACTGTAAATTTAAACAGATAAAGATAATGCTATGGTGGATATTTCTGAATTACTTGATGGGTTGAATGATAAACAGCGTGAAGCGGTTGCAGCTCCCCTTGATAACTGTTTAGTACTGGCTGGGGCGGGGAGTGGTAAGACCCGTGTATTAACTCACCGTATTGCATGGTTGATGGCAGTAGAAAATATTTCTGAGGGGAGCATTATGGCGGTGACTTTTACTAATAAAGCCGCAGCGGAAATGCGCCATCGTATTCAAGAAACATTAGCCAAACATTCACAAAACAGTTTATTCGGAATGTGGATTGGCACTTTTCATAGCATTGCTCATCGTTTATTGCGAGCACACCATTTGGATGTCGGTTTGCCGCAGGATTTCCAAATTTTGGATTCGGAAGATCAATTTCGTTTAGTTAAACGCTTGCTAAAATTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCAGGCGGCTGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63541-65440 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLHS01000011.1 Rodentibacter sp. Ppn85 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 63541 32 100.0 35 ................................ TGATTTTGGCGAAGTCAAAATCAGAAATAAAGGCA 63608 32 100.0 34 ................................ ATATCGTCATTGATGATGGTCTGACGGGTAATAC 63674 32 100.0 35 ................................ ACGCCATTGAGCATTAACGCACCAAGTACCATTTG 63741 32 100.0 35 ................................ GCAAAAGTCAAAGCGATTTTAAAGTGAAAAGCGGC 63808 32 100.0 37 ................................ AGCCGTTAAAAGACGCTAGAGCGAAAAGTTACGGTGA 63877 32 100.0 35 ................................ AAAAGTTCTCGCACGCTGCCAATAGTGAGCTCTTG 63944 32 100.0 36 ................................ AAGCCCAAATCTTCCACATCTGCGCCATTTACAAAA 64012 32 100.0 34 ................................ ACTTATCGTGAGAAACGTTTTGCAGAGGGGGCGT 64078 32 100.0 34 ................................ TATGATGAATTAAATGAGCGCACTCATTTACCGG 64144 32 100.0 34 ................................ CAATATGGCTTTTGCAACCAGTATGAATGAAGCC 64210 32 100.0 34 ................................ ATTTTATGTCGAGTACCTGCACATATTGCAGACA 64276 32 100.0 34 ................................ ATCAGTCCCTTGTTTTGCGTGCAATAACGGAACA 64342 32 100.0 35 ................................ ATTTATTGAGTTAATGGCTAAATCTGGCTATTCAG 64409 32 100.0 34 ................................ ACTTTACAGAACATGGATAAAGTAAAAGAAAATG 64475 32 100.0 34 ................................ TTATCAAATAGAACCTATAAGGGGCTATCATTAT 64541 32 100.0 34 ................................ CCGGGTCATTCCCTAAATGCCCCACTATAATGAC 64607 32 100.0 35 ................................ CCATTGATATTGTTCATTTGCATATTGCCCCAGTT 64674 32 100.0 35 ................................ ACCGCCAACCCCACAACGCTGTCTTGTTTGTAAAA 64741 32 100.0 34 ................................ AGAAGATAAGGAATTAATGTCGGCTCAAACTCTT 64807 32 100.0 33 ................................ AATCTAAAGGGGATTGGGTGTCTTTTCGACCAA 64872 32 100.0 35 ................................ TTTAAAGATGGAAAAACATTTAAGTTACATAGTGA 64939 32 100.0 36 ................................ TCAAACTGTCGAGAATAGCCACGATATTTTATTAAG 65007 32 100.0 35 ................................ AAAAGCTAAAACAACTTTGACTGCAATTGCTATTT 65074 32 100.0 36 ................................ TCCCATAAGGGTGACAGTTATTCGCATCAGGAATCG 65142 32 100.0 35 ................................ CGCAGATGCGGCGGCAACCGCAGCCGGGAATTACA 65209 32 100.0 34 ................................ CTCGTAATACCAATACCGTATGGCGTGCGTTCAA 65275 32 100.0 35 ................................ AGAGCAAGTAGGGATACCGGTTGTGACGTATAGCT 65342 32 100.0 35 ................................ TAACCAAGTTGTCGATTCATCAACCAGTTATTTAG 65409 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 29 32 100.0 35 GCAGCCGCCTTCAGGCGGCTGTGTATTGAAAC # Left flank : TTGGAGTGAGTTATTTATGATGATGTTAATTACCTATGATATCTCTTTTGAGACAGATGATGGTGAAGCAAGGTTACGTAGAATAGCCAAACATTGTTTGGATTATGGCGTTCGCGCACAATATTCCGTGTTTGAATGTGATGTAACGCCTGATCAATGGGTAGTTCTAAAAGAGAAACTTCTCAATACTTATGATCCTAAATGTGATAGTTTACGGTTTTATCATTTGGGGAGTAAATGGCGTAATAAAGTAGAACATCATGGAGCAAAACAATCAATAGACATCTTTAAGGATACGCTGATTCTGTAATTCGCTAGCCTATAGTTATCAAGAAAAAGCTGAGCGGTTAGCGATAATAAAAGTTCTTTAAAAATTAGTATTTTATAAAAGTGAAGTATGGCAAGAAGAGCTGTGTTATACTTCGCATCACTTCCAAAGTAGAAGCTTAGCGAATTAGGGGCTGTAAAGCCTTATAGTGAAAGGCTTCAAAAGCTAGGGA # Right flank : CCCCAATTACAAGCCATTTACGGTAAGGATAAAGCGCAGCCGCCTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCAGGCGGCTGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //