Array 1 108119-106221 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEI01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2237 NODE_3_length_416029_cov_6.34788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 108118 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 108057 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 107996 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 107935 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 107873 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107812 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 107751 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107690 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107629 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107568 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107507 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107446 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107385 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107324 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107263 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107202 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107141 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 107080 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 107019 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 106958 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 106900 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106839 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106778 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 106717 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106656 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106595 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106534 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106473 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 106372 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106311 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106250 29 93.1 0 A...........T................ | A [106223] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126017-124401 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEI01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2237 NODE_3_length_416029_cov_6.34788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126016 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 125954 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 125893 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 125832 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 125771 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 125710 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125649 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125588 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125527 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125466 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125405 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125344 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125283 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125222 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125161 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 125100 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 125039 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 124978 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 124916 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 124855 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 124794 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 124733 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124672 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124611 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124550 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124489 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124428 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //