Array 1 41597-39432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAX01000003.1 Escherichia coli strain MOD1-EC5847 MOD1-EC5847_3_length_280306_cov_69.7063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41596 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41535 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41474 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41413 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41352 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41291 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41230 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41169 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41108 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41047 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40986 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40924 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40863 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40802 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40741 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40680 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40619 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 40558 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 40497 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 40436 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40375 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40314 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40253 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40192 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40131 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40070 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40009 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39948 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39887 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39826 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39765 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39704 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39643 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39582 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39521 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39460 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67572-67299 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAX01000003.1 Escherichia coli strain MOD1-EC5847 MOD1-EC5847_3_length_280306_cov_69.7063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67571 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 67510 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 67449 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 67388 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 67327 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //