Array 1 78176-77111 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSP01000015.1 Brevibacterium casei S18 Contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 78175 28 100.0 33 ............................ TGCGGCAACGGACGGGTCATCCCAGTTGTCCCG 78114 28 100.0 33 ............................ GGTGCAGGTCAAGCGCACCGGCACCACCGTCGA 78053 28 100.0 33 ............................ GAAGTCGCGGACTGCCGAGACTGCGGACTTGGC 77992 28 100.0 33 ............................ GAGCTCGCGCTCCTGGCCCTGCCGGTCATCGCT 77931 28 100.0 34 ............................ GGTGCTCATGGTCGCCTCGGACGACCCGATCGAG 77869 28 100.0 33 ............................ GGTCGGACTGGAAAGGGACTGGACGGACTTCAC 77808 28 100.0 33 ............................ GGCCGATACCGTCGAGCACGTCGTCACGGGCAT 77747 28 96.4 33 ................T........... GGGAGTCGCCTGGGGCAAGGGCCAAGCCTGGGC 77686 28 100.0 34 ............................ TTCCTCAAGTCGCAGGGCTGGGAGCGCCTGCGGG 77624 28 100.0 33 ............................ GCACCTCGGCTACCCGACGCAGCGCGCGGTCGC 77563 28 100.0 33 ............................ CTGTTGGACGGGGCCCGTGGGTTGGGGTTGCCG 77502 28 100.0 34 ............................ GGGATACTGCCCGGCGCACTATCAGCAGATGCGG 77440 28 100.0 30 ............................ CTCGTCCTGGATCTCGATGAGGTCCTTCGT 77382 28 89.3 33 ..AG..T..................... GGTGCTGTGGGGTACACGCGTGTACTGCCACAC G [77377] 77320 28 100.0 33 ............................ GTTCACCGGCGAGGACCAGTCCGGCACCTCCAC 77259 28 100.0 33 ............................ TTCGTCGCACAGGTAGTCGACTGTCCATCCGTC 77198 28 100.0 32 ............................ GACCTGCTCGCCGCCCTGGAAGTTGACGAGCT 77138 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.2 33 GTGCTCCCCGCGTTCGCGGGGATGATCC # Left flank : CAGCGACAACGTCGTTCACCTCTGGGATCCAAACGGACTTGTCGCGGGCGGCGCCAATTTCGATTCGGAAACCTGATGGTCGTCATTGTGGTCGCAGCCTGTCCGCCGGGCCTCCGGGGCGAACTCACGCGGTGGCTGTTGGAAGTTTCTCCCGGGACCTTCGTGGGCCGCCTGTCGAAGCGGGTGCGTGAGCGTGTGTGGCAGAGAGTTGTCGAAGGTGTCGGCACGGGAAGAGCGACGATAGTTTGGCGTGCCAATAATGAACAAGGCCTTGAGTTCCTCACACATGGAGACACGTGGAAAGTCAGCGACTTCGACGGCATCAGCCTGATCACCAGACCGAACCCACAGCAAACTGAGCTTCGCCGCAAAGGTGTGAAGCTGTCGGATTCTGACGAAGGTGGTCTTCAACAGGGATGGAGTATGGCGTCGCGTAACCGCAGACGTTGAAAGTCATGCAGTATCTCCGTTAGCCAAGTTATTCTTGCTGTTCAGCTAGT # Right flank : GCCGTTACCTGCCGTGGGCGCCATCGCTCATCCCTGCCTCGGCGGGTGCCGGCCTGCTGTCGGTCCCGTGCTCTTCTCCGGGGACACGCACTTCAACGGCGGCCCCGGTGCGACGGGTCGTTCGCACTCGAGCTTCGAGACGATCATCGAGTCGATCAGGGACCGACTCTTCACCCTGCCCGATCCCACCGTCGTCCTCACCGGCCACGGCGACTCGACGTCGATCGAAGCCGAGAAGCCGTCGCTCGAGGAATGGATCAAGCGCGGGCACTAAGACGCAGCGATCGAGCGCCTCAGCCCGACGAGCGCCGCGATGCCGGAGACCCGGCCTCGCGGTGCTTCGTCGTCGGTGCCGTCGACCGATGGGCGCACACCCCTGTACACCCGACACCGATACGCGCACACTGAACCTATGGCCAAGACGAACAGAATCATCAGCGTCTCCGTCCCCGTCAGCGACCTCGACGAGGCAACCCGCTTCTACACCGAGGTCCTCGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTTCGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 313366-314781 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSP01000002.1 Brevibacterium casei S18 Contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================= ================== 313366 28 100.0 33 ............................ GGGCATCGAGCCTCGTCGCGATTTCTGTGTAGT 313427 28 100.0 33 ............................ GGTGGGCCACCACTCGGAGAAACGGCACCGCAG 313488 28 100.0 33 ............................ CGGGGACTGCGGATTGGGCAGATCCGTCCACCC 313549 28 100.0 33 ............................ GCAACCGCACAAGGCCTGTCTGTACGTCCGGTC 313610 28 100.0 33 ............................ GGTCCTCATGCGCAACCCCGATCTCGCGCACCG 313671 28 100.0 33 ............................ GACGAGCTTCACACCCGTCCACCACACGGCGGC 313732 28 100.0 33 ............................ GCTGCCCCGTTCGCATGGAATGCTTGCGATGGG 313793 28 100.0 33 ............................ CACTGGCGAGATGACGTTGGTCTTGACCCAGTC 313854 28 100.0 34 ............................ GTGGCAGTATGGGCACAGTAAAAGCCCCCGCGAG 313916 28 96.4 33 ...........G................ CTCCGGTACGCGGAGACCTGGCAGACGGGGTGG 313977 28 96.4 33 ...........G................ CTGTTCACCGGCGGCCACAAGGTCGTCGTAGGT 314038 28 92.9 33 ..C........G................ TTTCCTGGCCGGAGGGAGTCCGCTGATCGGCGT 314099 28 96.4 33 ...........G................ CGCCTGGTATTCGGTCATCCAGTCCGGTGGGGT 314160 28 96.4 33 ...........G................ GTACGCCAACCAGGCCGGCCAGTACGTGACGGA 314221 28 96.4 33 ...........G................ GGCAAGGCCGGGGCGTCCATCTTCTCGTTAGCC 314282 28 96.4 33 ...........G................ CAGTTCTCTCGGTAGAGCCAGCGACTGCAAATC 314343 28 92.9 33 .......T...G................ GTCGAAGATTTGGCGCATCGGCCCGCCGAGGTC 314404 28 96.4 34 ...........G................ CAGCTAGTCCGAGGACCGGCCCCGCTGCTGGGGG 314466 27 85.7 33 .G...G.....G....-........... GTACGGCTTCTTCACGTAGTCGTTGTAGGCCTT 314526 27 89.3 33 C....-...................C.. GGGCACCGCGAAGGCAATGTCGGTGGCGTTTCG 314586 28 96.4 33 ..............G............. GGGCAACATCGAGGCCGAGTCTCTGGTGGCGAC 314647 27 85.7 81 .....-.........A.C....C..... GAACCAGACGAGGCACCTACGAGGGTGCCAATGTGCTGGCCGTGATCCCGAATGACTTGCACTCCGAGAACGGTCTTCAGG 314755 27 82.1 0 .......T...........AA...-G.. | ========== ====== ====== ====== ============================ ================================================================================= ================== 23 28 95.6 35 GTGCTCCCCGCACTCGCGGGGATGATCC # Left flank : TCTTCACCCTGCCCGATCCCACCGTCGTCCTCACCGGCCACGGCGACTCGACATCGATCGAGGCGGAGAAGCCGTCGCTCGAGGAATGGATCAAGCGCGGGCACTGAGGGCTACTGTCTCGACAATCACAGCGAAGACTGAGCGGCACCTCAGCACTGATGATCAAGTGTTGAGGTGCCGCACTCCTCCCCGCGAAGGCAGGGAACATGACCGGTTAGCGGCCACAGAGAACTTCTAACTCGGGTCACCCCAGCGGAGTCTTGCCGGGAACTCATTGCTATCCATACCGAGTCCGCCCTGGTTCCATTATTCGCGACGAACTCCCAATTGTTGTGAACGCTCTCTGACCAAAGCAAAAGAATCCAACCGAAGCACAAACTTCCGCCAGGGCCAGCCTCGAACACGATATGACCAGTACCAACCGCATCATACCGAGCTCAGTGCCGGCGAAACTCATTGAACTTGTCAGCCGCGTGTTAGATTCTTGCTGATCAGCCAGT # Right flank : TCCAAAGACCACTTCAACCACCTTGCATAAAAAGTGCAGCTTGGGACTCATCGAAAACCGGACCTCAACTTCGACCACAAGTACCAAGTCCGTGCCAGAATCTACTTCACCTGTGTTGTGACACATTGGTTGGCGACGGCATTTGTCACCGAGCCCTTGACGCCGACAACAAAAGCAGTCATGCTCAAGCGAGAGCAGTCTTACAGATTACT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACTCGCGGGGATGATCC # Alternate repeat : GTGCTCCCCGCGCTCGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //