Array 1 21577-20163 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXD01000015.1 Escherichia coli strain MOD1-ECOR18 ECOR18_15_length_104351_cov_119.343, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21576 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 21515 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 21454 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 21393 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 21332 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 21271 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 21210 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 21149 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 21088 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 21027 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 20966 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 20905 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 20844 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 20783 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [20757] Deletion [20743] 20741 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 20680 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 20619 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 20558 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 20497 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 20436 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 20374 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 20313 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 20252 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 20191 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 74231-73104 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXD01000023.1 Escherichia coli strain MOD1-ECOR18 ECOR18_23_length_78220_cov_112.668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74230 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 74169 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 74108 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 74047 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 73986 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 73925 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 73864 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 73803 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 73742 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 73681 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 73620 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 73559 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 73498 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 73437 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 73376 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 73315 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 73254 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 73193 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 73132 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //