Array 1 4281109-4279144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033352.2 Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4281108 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 4281047 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 4280986 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 4280925 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 4280864 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 4280803 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 4280742 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 4280680 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 4280619 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 4280558 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4280497 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4280436 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4280375 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 4280314 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4280253 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4280192 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4280131 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4280070 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4280009 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4279948 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4279887 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4279825 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4279722 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4279661 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4279600 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4279539 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 4279478 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 4279417 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 4279356 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4279295 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4279234 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4279173 29 96.6 0 A............................ | A [4279146] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4298733-4297240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033352.2 Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4298732 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 4298671 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 4298610 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4298549 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 4298488 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 4298427 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4298366 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4298305 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4298244 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4298183 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4298122 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 4298061 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 4298000 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 4297939 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 4297878 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 4297817 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 4297755 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 4297694 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 4297633 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4297572 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4297511 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4297450 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4297389 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4297328 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4297267 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //