Array 1 277813-277117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWL010000005.1 Listeria innocua strain FSL L7-0795 NODE_5_length_279678_cov_49.689332, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 277812 36 100.0 29 .................................... AATATAACATTGTGAATTGTTCACGTAAA 277747 36 100.0 30 .................................... AATTAGAAAGAACCAACCAGGAATACGAGT 277681 36 100.0 30 .................................... GTCTACATAAAAACCTTTTTCGTCTATTAA 277615 36 100.0 31 .................................... TTAAAAAAACAAAGTGAGTTATTGTTGGAAA 277548 36 100.0 30 .................................... TAGCGTTGGTAGTATTGAGTGTAGGAACTT 277482 36 100.0 30 .................................... ATTATTTATCACACTGTAATCACTCTGGCC 277416 36 100.0 30 .................................... CTACTTGGGCGCACTGACAATAAAATGGAC 277350 36 100.0 30 .................................... CCATCTATTTTTATCTCTTTGATGGCTTTA 277284 36 97.2 30 ............A....................... AGCCTCTGTAGCAGGAAGAAAGGTGCTGTT 277218 36 97.2 30 ............A....................... CTTCTTTATAAGCGATAGTTGCACCACGAA 277152 36 91.7 0 ............A.............T.G....... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTAGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CAGATGCAAGTTTATGTGATTTATTAAAAAGGAACTAGTTAAGAAATTGAAATATAAAATGATACAGGATTCACGAGGTAATTCAAAAGAAGAAGCTGTTTTATGACTAGTGCCCAGTTTTTGGATGTATTTCTCTGCTCATTTCGCGTGCAGATGCTTTACGCGTAGATAAGCTATTTTTAGTACGGTATTTTCCTGTGGGAAGGTCTCTTTCTTCGTGGCAATCATAGAAGTCAGCAGTTGTTCGATTTGATAGAGGATTAAAGAGTATCTTGCTTCGTTTGCAGCATGACTAAGTGTTGTTTTTTGCCCTTCTGAATAAAGTGTGTCGCGATAATCTGACTGGAAACGACGATTTTCAATTCATTAAGATAGTGTTGCGCGATTGCTTTTCATTCAAAATTATATTTGTCTACGGTTTGTTTTGCGGTAATATCGTAGTCATAAAATCTTCGTAGTAGTTGTAATTGTGTCTATTTCACAGCGATAATCAGAAGTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : GTTTTAGAGCTAAGTTATTTTGAATGCTAACAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 390647-390425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWL010000001.1 Listeria innocua strain FSL L7-0795 NODE_1_length_680382_cov_61.678187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 390646 29 100.0 36 ............................. CAGATTGGATGATTTCCAGCGGTACTGGTAAAATGC 390581 29 100.0 33 ............................. AGCAGAAAAAACGTGCTCACACCATCTATCAAG 390519 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATTGAGCTATAACTGA 390452 28 79.3 0 ............C..CA......A-...G | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 94.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : ACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAGCGTAAAAACACCCGAGACCGACAGAAAGTGTGAATGCCTGGAGAAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTAGCAAAAGTGGATTTTATCTGATTTGGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTAAAAATCACATTTTCAATCTATATCCATTAAAATATTGCTTTTACCAGCTATCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 5645-5214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWL010000014.1 Listeria innocua strain FSL L7-0795 NODE_14_length_5685_cov_72.804743, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5644 36 100.0 30 .................................... TCTGAATAAATTAAAACCTGCTGATTATAA 5578 36 100.0 30 .................................... ACTAACGTATACATCTTCGTTATACTGACC 5512 36 100.0 30 .................................... CTTAGAAAAGCGTAAAGTTATCTGCAATGA 5446 36 100.0 30 .................................... CACGTATAATCCCAACATCACGGTTGAAAA 5380 36 100.0 30 .................................... AACGATTTAAAGCTAAAAGAAGTGATTTGA 5314 36 100.0 30 .................................... AAAATAGAAAATATTTGTAATAGTGGTGTA 5248 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGA # Right flank : ACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGACCCGACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAGAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAAATTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGAGTATGAATCTAATAGTTTGAAAATACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACTTTTACATATATCACTTAAAATAAAAAGGAGCCTCCATTCATGAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //