Array 1 17604-17997 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWKB01000211.1 Azotobacter chroococcum strain P208 NODE_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17604 28 100.0 33 ............................ CAGGTCGATGACGTTGGTCGAGATGGCCGTCTC 17665 28 100.0 33 ............................ CATCGCGCCGTGGATCGCGCATGGCGCCAAGTC 17726 28 92.9 33 .......T....T............... CCATGGCCAGGATGGGCTCGGGGTACCCGTAGA 17787 28 100.0 33 ............................ CATCAAGAACATGCCCGACGTGTTCATCCGCGA 17848 28 100.0 33 ............................ CGGCTACAAGAAGGTCTGGCAGGGCTACGCGCG 17909 28 100.0 33 ............................ CACCTCACCGGTCATCACCTGAGCGACCAGCAG 17970 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : AAAGCAGGCTGCCGAGCTTGTCAAACTCATTGGTAACCCTGAACAGGCGGTGAATGCTGTCGATATTGCTCTGTTTGGCCGCATGGTCGCCAAGGCCGCCGACATGAATGTCGAAGCGGCGGCCTCCTTTGCCCATGCCATTTCCACCCACAAGGTCAGCAATGAGTGGAGTTTTTCACGGCAAATGACCTGCCGCCCGCCGTGCGCGACCGCATGAAGCTCTGGTTCGTCGAACTCAGGCCCAACGTCTTCGTCTCCGGCATCAAGGATTCGGTCGCCCTAATGGTCGTCGACTACCTGTACAAGTACTGCCCGCCCGAGTCCGGGCTGGTGATCTTCCGCTCCCTGCCACACCCGCCTGGTTACGAGATCAGGACCATCGGCCCGCCCCGGAAACCGATGACGACCTTCTCCGGCCTGCAGCTCGTCATCGAAACCCTGACGCAGGCGTAATCGGCAGATCTTGTGTCTGCAGCCTGGCTCATTAACAATCTGTTGGT # Right flank : CTCGGGTTGATGGCGGCGGTTTGTACCTACAAATGTCTTCCCCACGCCCGCCATCTCCCGCCTACCCCTGGCAATGTTTCAAGCGGCTGGGTTTTCCTGCGCCATTGGTTGGTTCCTGTCTCCCACCGTCCAGTCCGGTTAGGCCGCCCCACCACCGGTCGCCACCGCCGTCAGCCGCTCTGGAAGCGTCCATACTGAAAGGCGGAGGTGAGTCCATGACCAGTTCCGCGCAGATCCTCGATACCGCCCTGCAGATCGCCGAGCGCTGCGGTTGGGAGCGGCTGCGCCTGTTCGACGTGGCCGCCACGCTGGGCATCGGGCTGGACGAGATCGCCCGCCGCTACCGGGACAAGGACGCCCTGGTGGAAGCCTGGTTCGACCGCGCCGACGCGGCCATGCTGGCCCGCGCCCGGGATGCCGGTCTGGCGGTGCTGACGCCGGCCGGGCGGCTGGAGGAGCTGCTGGTCGTCTGGCTCGCGGCGCTGGCGCCGCACCGGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6370-5747 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWKB01000199.1 Azotobacter chroococcum strain P208 NODE_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6369 28 100.0 32 ............................ ACGGGTCCGGTCGATTCCAATGGCTCCCGTGA 6309 28 100.0 32 ............................ AAGGGAACGCGCTCCAGTCGATTCAGTACCGG 6249 28 100.0 32 ............................ GCCTGGGATCATGCGACCGTTTATCTGTCGCA 6189 27 96.4 32 ......................-..... CCAGGACGCCAGCGAGGGTGAGCGGCCAGAGG 6130 28 96.4 29 ....................C....... ATGGCCGGTACCGGATCGACCACCTTCGA 6073 28 100.0 32 ............................ TACGACGACGACGACATTCTGCCGTTCTTCAG 6013 28 92.9 32 ....G...............C....... TGATGCCCGCCAAGCGATCTGCACCCACTGAC 5953 28 100.0 32 ............................ TGGCCGCGGTCCTGGAGCAGGCGCGGCTCGAA 5893 28 92.9 29 .............C......C....... TTGAGAACGAAAGGGATTTTCAATTCTAT 5836 28 92.9 33 ....................C.....A. AGGGGCACGAATACCCGATCAGCAACCGGGCAC 5775 28 82.1 0 ....G......C.....C..C.....T. | G [5752] ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTTTTCCGCCGTATAGGTGGTTTAAAGG # Left flank : CACGAAGATTGATATGGCTCGTGGCGACTACAAGATCAACATGAGCAGCTACCAGGGCATTCGTTCACGTGAGGTCTATTGGTGGGGCGTGGGCGATCCCGAGCGGACTGTCGAGCTGATTCAGCACCACATTCAGGGGATCGGCAAACGCTCTAATGCTGGCGCTGGCCAGGTGGAGTCCGTCCGCTGGGAGGATAGCGAGGACCATTCCTGGATTACGGTAAAAAGTCGCCCGGCCCGACCTCTGCCTGTCGCGCTTTGGAGCGCAATCTCCGGAGGCCGTCCTGCTGCGGTGGGAAAGGTGGCTGTGCGGTTGCCCTACTGGAATGGAGAACTGGCCGATGCGGTCTTTCCTGAATCCCTGGTTGTTTGACCTTTTTTTCAAGCGCTGCTGTGAGCGCCGGAAATAGGGATTACTTGGTGGTTGTTAAAAAAAGGGTGGTTGGGTTAGCTTTGCGATAACCCTTTGAGCTCAGGCGAAAAAGAGGTTCTGGCTTCTA # Right flank : CAGCGGATGCTGACCCGCCCGTTCCACGGTCACGGTTCCACAGCATTTGCCGCCGCACAGGCGGCTTTCCTCGTACTCGTCGAGTGCCGTTCAGCTCATGCGTCGGAGCCGGCGAGCAGCTGGAACAGCACCGTCGGCAGGGGGGCAATGAGCACGGGGTTGCCCATGTACTCAGCAATCCCGTCCAAGGGAAAAACTCCATGGGGGACTTCCGGGGCATCGCCAAGCCATATCCGGGCCCGATAGTCGATGCGATAGCCGCTGGACTCGACCCAAAAGTGCGGTTGTACGATCCGGCCGCCCAGGCTGAGGCCTGGCAAGGGATGCCCTCCTCGGCGAGACGAGTCACGACCAGGCGTGTCAAGCCATCGCACTCGACTGGAGAGGCATCCAGCGGGGCAAGGAGGGCGCGCAGGCCCTCCAGGGTAGGGGGAGAACTCACTTTGCCACCTGGCGGCGCATAGCGCGCAGCAGCAGGACGCTGATCGAGGTGCCGGCGA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCGCCGTATAGGTGGTTTAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //