Array 1 54505-53875 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMN01000004.1 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 strain JCM 14932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54504 36 100.0 30 .................................... GGATAACCCCAAATGTTGTAAGTCACTTCT 54438 36 100.0 30 .................................... AGACTTGCTCAAACTCGTAACCATTCCCGT 54372 36 100.0 30 .................................... CTATGCTCCCCGTATTGATATAGCAGACTT 54306 36 100.0 30 .................................... ATTTAGCCCGGGTAACGCCGAAATGGTTGC 54240 36 100.0 30 .................................... TTCAATACGACAGCGAAAAATATAGACCAA 54174 36 100.0 30 .................................... TTAACACTCGCAGGTATATCGAAATCACCG 54108 36 100.0 30 .................................... TACTTGATTCAACCTGTCATAACGAAATTT 54042 36 100.0 30 .................................... AGAATTTAGCTCTTGATGACAGGACAAATT 53976 36 100.0 30 .................................... AGTTCAATATTGTACTTAATTTCATCTCGA 53910 36 75.0 0 .C............G........AC....AA.CC.A | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAAC # Left flank : TTTTACAATCCAAATTAAAAAGCAACGGTAATACAACTTGGTTGGTTCTGTACAATATTGACAGTGTAATATCAGGAGATACTCAACAATCTCTTTTTATAAAATTAAAAGAACTAATGGATGATTTCGATCTTAAGATTATTTGTTTGAGCCATAATTTGGAGAACATACCTATAGATCGAACCGATGTAGAAAAGATAGTTTTGTGTACCAAAAATTTTCATCAGTTGTTACCAATTGATGAATTAGTTAAATCTATTGAATCTAGATATCCTAATAAATTAAACATTGGGCACAATGAAATCTTGGAATCGATTGTAAGAACTGTTTCATATGTTGGAGATGAAAAAAATGTTTCTCTTGCTGGAAAAGATTTGGTAATATTGAAGATACTAAATGATATTTTGAATTATGAGACGTCATACTGTTTTGAAAATCATTTATTATCGGATGCTGAGGCCGAATTTCTACAAGATTAGACGTTAATTTTTAGATTTGAG # Right flank : AAATACCACTCCAGTCCAAGCACAAAAGTGCAAAGACCAGAGCGGTATTTTTTATCCAAACTTATTTATATTTTTCTTCCAATCCACTCATCCAAAGTCCCAACAGGGTGCCAAGTACGAATGCGATCAAACTTAACGTAATAGTAGTACCAGTAACACCAGCATAAGAGATACTCTCAGCTGAATAGGGGTTAGGTACCAAGATCAGAATTGTACTTGCCAGCACGATTCCTAGAATAAAGTGATAAACACGTGAATGATGATTTTCAATCAAGTATTCCATCCCCTTGGAGAACAGTACCATGGCAACTATTCCACCAATAGTGATAGGCAAGAAGACGCCAACGATATCAAAGTTTTTGAATCCCGTCAGCATGGGTGTATACAATCCGAGTATCAATAACAGATTAGAAGGACTGAGTCCAGGGACCAGAACTCCCAATGCAATCAGTATTCCTGCCACAGTGAATCCTAGAAAGTTAGCGGGGATCGTTCCAAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 263-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMN01000003.1 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 strain JCM 14932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 262 36 100.0 30 .................................... AACAATTAAAGCACAAATGTCTACTCTTGA 196 36 100.0 29 .................................... CACGACAGTACAGCAAGACATCAGCCAAG 131 36 100.0 30 .................................... GGTAAATGTTACTTCAAATGAGCTGACCCA 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAAGTACGTCATTTCATGTAGTTAAGAACC # Left flank : AGTTTTGAACTTAACTCAACTGGTAATTTGAAATTAGTTCTTCAAAAAATCGTCTCGGATAACCAAATTATTAATCACGACCGAATCGAAAAACTTAATCACGAATTAAATGAACTTATATTTGATTCAATAAGTAGTTATGATGAGACTTTTGAATATGATTTATTACCCGAATTAATAAAATTATTAAAATCCAAAGATTTTAAGATAGATAGTAGTAACTGGCAGAATTATTATGATAAACTTCAGTCAGTAGTTAGATTTTATGTAGAATTCAGTGATAAGAGATTATTACTGTTTCATGGGTTAGAACGCCTATGTAGTTTGGAACAACTTAATGAATTGAATGATTACTTAAAATCCATCAAGTTAGCTATAGTAAGTTTCGAATCATATCCAATGACATTGAAAAAGTCCGGCTTGAACACCCGAATTTATTCGATTGATGAGGATCATGTTCGATTTGACTATTAACACTTAAAGTTAACGTTAAGTAGGTG # Right flank : CGGTGATCAAAAGCTTGATAATGTATCTAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTCATTTCATGTAGTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //