Array 1 411-78 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898398.1 Salinispora arenicola CNT859 D462DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 410 28 100.0 33 ............................ CCAGTGACCCACCGGGTTGCACTCCAGGAAGAT 349 28 100.0 33 ............................ CGTCTGGAGCTGCGGACACTGCCGCGCCTGCTC 288 28 100.0 33 ............................ CGTCTGGAGCTGCGGACACTGCCGCGCCTGCTC 227 28 100.0 33 ............................ CAGGCCGCGGGATCCGTCGAGCAGGCGGGCGGC 166 28 100.0 33 ............................ CGTAACGCGCGTCGCCGCGGGCGTCGGTGTGGT 105 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 CTGTTCCCCGCACGTGCGGGGGTGATCC # Left flank : TCGCTTCTGCCCCGGGGTGACAAGGTGGAGCGCCCCACGGACGAACGACCTTGGCGCCCCGGGGCAGAAGCGATACACCGAAGGCGTCAGCACGACCGACGAGACCAGGAGGACCCGGGCCGGCAAGCCGTATCCGGCAGGGCGGACGGCCGGCCACAGGCGGTTACTTTCGCCACTGGTGCGCCGCGTGCGCCGGGACGTGACCGGCCGCCAGGCCGCACGCGCGGCCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACCACGCTTCAGCCACGTGTCCCGGTCTCAGAACGTGACTATCAAAGATCAGCTACGGCTGTGGCCTCAGCGCGACAGTCATGGTTCTCGTCCCTTGAGGAGGCCGCTATGCTGCACCCAGTCTTTGCACCCAAGGCGCGAGACTGATCTTGGCGGTCGTAGTGAATGAAAACATCATAGTTGATCTTTAGAGCCGCAGGTCAGGAAGC # Right flank : CCGTCGACCAGGAGTCCAACCGGGAGGGAACCCCTGTTCCCCGCACACGCTATCGCATGGTACTACCTATATTGAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2-1309 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898414.1 Salinispora arenicola CNT859 D462DRAFT_scaffold00018.18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 2 36 100.0 39 .................................... TCTCGACCGCCAACGCCACCACCGACCGAGCGGCCGCCC 77 36 100.0 38 .................................... CGGATCGCACCGCTGATCGCCGCACTCGCGCTCGTCGC 151 36 100.0 37 .................................... GCTGCGAGTCCAGCCTGACAACCCACTGGCGGAGACC 224 36 100.0 39 .................................... TGCGACTCGGCGAGTTGCACACGTCGGCCGTCGACCTCC 299 36 100.0 38 .................................... CGCGCATGTGCGCGCCCGTCCACGCCAACACGACTTGC 373 36 100.0 38 .................................... ACCCCCTGTGCTTGGCTGAGACACAGGGTGACCTCGTC 447 36 100.0 39 .................................... GACTGATCCGGCCTCGGACCTGTACCCGCACCTGGGTAC 522 36 100.0 38 .................................... AACATCAATTCCTCGCTTGCCCCCAACCACGACGAGTC 596 36 100.0 38 .................................... TCTGGCAGGAGGACTCGATTACGGCGATGCTGGCCGTG 670 36 100.0 38 .................................... GCCGAACGAGCCGCCCGCACCGTCGGCGGTCAAGGCCG 744 36 100.0 40 .................................... CACTCCGGCGGCGGCCTCTACCCCATCTGGCTGCTCACCG 820 36 100.0 37 .................................... GGTGAGAACGCCTGCTCCAGGCGTGCATCCTCGGCGG 893 36 100.0 40 .................................... ACGCCCGCTCCATGGGCGCTGCGGTCCCCGCCTGGACGCG 969 36 100.0 39 .................................... GAGTGGCAGCGGCAGCAGGTGTTCGACCTCATCGACGCG 1044 36 100.0 39 .................................... CGTGTGTCCGCGCTGCCGTTGGCTGCGGACCGCAGCGGG 1119 36 100.0 37 .................................... GGTCACCGACTTCTGCACGCTGAACGTGGCGTCAAGG 1192 36 100.0 46 .................................... CTTCCTCTCCGAAGACGCCGACTTCGCCGAGATCTGTGCCGACAAG 1274 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 18 36 100.0 39 CCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : CC # Right flank : GGGCTCGGGAGCAGCGCTTATAGCTGGCGGTGGTTGGCAAGGTGGTCCAGGCCTTGTCTGTATTGCCCGCTTGACGCGCCTTTTGGAGTTCGGAACCTCCCGCGTGTCGGGTGTCCACCGGGGGTTCCTAGGTCAACTGAGTGGCAGCCCGAATGGCGTGAGTGTGTGCAGTTATCAAGGTTCAAGCTGTAGGCGGAGCTTGGCTGCTCTACGAGTTGGTGAGGGTGACCGGTAGGGGAACGAGGACGCCGGCTGATTTGCGTCCCTCTACTGGCCGACGGTGAGCTGCGGCGACGGCGAAGACTCCGAGGGCGGAGATTTTGTCTTTGGACACAATGACGTGGCTGCCGTCGCTGTCGAAGGTTAGGTCTGGGTGTTCGATCAGGGCGCTGATGGCGATGAGATCGAGGGGTTGGCGCCATAGCGGCCAGATCATGATGCGTCGTCCGCCGGATTGCGGCGGCCGCCAGAGGGTGGCGGTTGCGGTGTTGCCGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4045-1622 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898419.1 Salinispora arenicola CNT859 D462DRAFT_scaffold00023.23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4044 37 100.0 37 ..................................... GCCCGCGTCCAGGTGTACGACGCGCCGTTCAGCCTCA 3970 37 97.3 36 A.................................... ATGTGAGGCTCCAGATCAGCAGGGCGGCCAGGAGGT 3897 37 97.3 35 A.................................... GCGAACTGTTGCGTCGAGCCGGCACGAATATGGCA 3825 37 100.0 35 ..................................... GCAATATGGGAGGGGGTCGCGCTTTTTAATAGCAA 3753 37 97.3 36 A.................................... ACCAAGGAACGGCCTTTCATGCCGCTGTCGAAATGT 3680 37 100.0 37 ..................................... TTGGTCATCGGCTGTCGGTCACAGGCCGCCCACCTCG 3606 37 100.0 38 ..................................... GTAAGCGCCGAGGCAACTGCCTACCGCACAGACCTGCG 3531 37 97.3 37 A.................................... TCCACCTACGGAAAGCGGTGTAAGCCGGGGGAAGCCT 3457 37 97.3 38 C.................................... TCGCTCAGGGAGTCGACATCCGGGTGGTCCAAGAGCTG 3382 37 97.3 37 C.................................... CCTTGCCTCGTCCGTGCGGATGCGCCGCAGGACCCGG 3308 37 97.3 38 C.................................... GCCCTATCCAAGCCCAGCGGCGCCCACAAACGACAGAG 3233 37 97.3 37 A.................................... GCTGAGACCGCGGGCACCGACGTCGTCGTCGATGTCC 3159 37 97.3 36 T.................................... ACTCGGCCTTTCCCGGCCCCCACAGGTACTCCAGCA 3086 37 97.3 35 A.................................... AAGGGCATGCTTGCCATCCCGTATCTGGATAAGGA 3014 37 97.3 38 C.................................... CCTCGCGGTCAAGCGGGTGTCCGGATCGACTGAGGGCC 2939 37 97.3 36 A.................................... CAGTGCCGGCTGGCGCATTGACGATGAGCCCCCAGT 2866 37 100.0 41 ..................................... GCCGCTTTCCTCGCCGCGCAAACGGCCGGCGATGGCCTGAC 2788 37 100.0 37 ..................................... TTGCTGTTCCGGACGAATCGCTGCCCGCTCTCCGGGC 2714 37 100.0 40 ..................................... TGCCAGACGTACAGTTCGAGGACGTCGTTGACGGCGAGTC 2637 37 100.0 39 ..................................... GGGCGGCAAGGGCAGGGCGAGGCGTCGCCCGGGTCGACC 2561 37 100.0 38 ..................................... GCTGAGCCGCTGGGCCGCACCGGGGCGAACGACCGCAG 2486 37 100.0 39 ..................................... CCGGCAGCCTTCGCGATGAGGGCGAGCATCACGTCCCGC 2410 37 100.0 41 ..................................... TGTGGCGTGTACTCGTGGCCCTGCCGGCAGTGGGTCTTCGC 2332 37 100.0 40 ..................................... TCCCGGTGTGTCGTGGGCGGGGGTGGGGTGGTGGTGCGCA 2255 37 100.0 36 ..................................... CGTCACGTCAAACTCGGTGACGGAAAAGGCGAGTTG 2182 37 100.0 35 ..................................... CCGGGCAAGGTGTCCGACCTCAAGGGCGGGCGGAT 2110 37 100.0 40 ..................................... TTCGCGGTGGTGTGGCAGGCCGAACCGGACGATGCGATGC 2033 37 100.0 38 ..................................... AGCGAGGAAGCGCAGGACCTGTGCCGTCGGACGCTGGC 1958 37 100.0 38 ..................................... ACAGCTATGACGAGGGTAGCCGTCTAGAGGCAACAATC 1883 37 100.0 38 ..................................... GTCACAGTCGATACGCCGACACCCAGATACGCAGCGAC 1808 37 100.0 38 ..................................... TCCCTCAGCTTTGACGGTCTCAGCTTCGTGCGGTGACC 1733 37 100.0 38 ..................................... TCGTATCGTGGCATCTCCGTTACCTGGAGCGACCAACG 1658 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 33 37 99.0 38 GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Left flank : TGCTACCACTCGTGCAGGCCCGGCTGCTCGCACGCCACCTCCGCGGAGACCTGCCCGCGTACCAGCCATGGACGGTGAACTGACCATGGACCTCCTCGTCACCTACGACGTCGAAACAGCCACCCCCGAAGGGCAACGCCGCCTACGCAAAGTCGCCAAAATCTGCGAAGCGTACGGCCACCGCGTACAGAAATCCGTATTCGAGGTCGTCTGCCGCGAAACCGACAAAGCGCGCCTCGTCAGCGCCCTCGAAGAAGCCATCAACCCAACCCAGGACAGCATCCGCATCTACCGGCTACCAGCCCACGCCCTCGACGACGTCGAACACCTCGGCAAGCCGCGACAGACCGATCCACGAGGAGCATTAGTGATCTAGGAACCCCAAGCTAACGCCAGAAGCCCAGGAGGTTCCGAACCCAAAAGTAAGGATGAATTGAACAAATCGGACCCTGGCCAATCAACTCTACATCACCAAGATCCTATTCCTGCTGCTCACGAAC # Right flank : GAAGGGTCCGGCGTGGAACTCAACAATGTGGGGTATCGGCTGCGCCCGGCCCTCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCCGGCGTGGAACTCAACAATGTGGGGTATCGGCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAACCACGCAATACCCGATCTGCGCGAGTGGCCGCCGGTGTGGGCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAACCGAGAATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 246-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898425.1 Salinispora arenicola CNT859 D462DRAFT_scaffold00029.29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 245 37 100.0 38 ..................................... ACGTGGAAACCACCGGCCGTGGCGTACGCGCACGGGGA 170 37 100.0 38 ..................................... GCGACCCGATCCGGGTCCAGAAAGCCCGCGCCGAACAC 95 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : ACGGCGCGTCGCCGATCTCATGTAGCGGCCATGTGCGCCCTGTATGGCTTGTCCCCTGAGATGACGTCGGCACTGCTCGCCCTGGCCGCCGAGACCAAGGCGAAGGGTTGGTGGCACGCCTACGGCGACACCTTGCCAGCCTGGTTCGAGCTGTACGTTGGGATGGAATCCACGGCTTCGCGCCTGCGGCACTGGGAGCCGGACTCGCTTCCCGGGTTACTCCAAACGAGGGCGTATGCCGATCACCTACTCCGGTCGCATCCGGGGCTTGCAGAGCGAGAGGTCGGACGCCTTGTCGAGCTGCGCATGGAGCGCCAAAAAATCCTAATGCGAAAAGTCCGGCGCCTCCGCGCCTAGAGGTCATTGTGGATGAAGGCGTACTGCGGCGGCCATTTCCCGGCATGGCGGACCACCTCGGCCACCTCCACAACCAGGCGATGGCCGAGGTGCCGTTCGGGCAGGGCGGCCAGCCCGCCCCACGCTGGCGGAATCGCGGGCAT # Right flank : GAGCGGAGCGTGCCGGCGTCTCCGTCGAGACGATTCGGCCGCAACGGAGACCGACCGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 235065-235451 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898400.1 Salinispora arenicola CNT859 D462DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 235065 24 100.0 37 ........................ CCACCTTTACCGCGGTAAAGGTCCACGCCGCACCTGC 235126 24 87.5 37 ....................C.GT TCGGCGTGTCCGGTGATGCCGGCGGCATCACGGTCGT 235187 23 91.7 36 ..........A......-...... CCACCGTTACCGCGGTAACGGTCCACGCCGCACCTG A [235193] 235248 24 100.0 38 ........................ TAAGTCGGGGTTGACGGGGCGTACGGTCCCGCACTGTT 235309 23 87.5 37 .................-....GT TCGGCGTGGCCGGTGATGCCGGCGGCATCACGGTCGT 235369 23 95.8 37 .............-.......... CGATGTGAAGGCAGAGTGGCATCGCGTCAACCCCTGT 235428 24 79.2 0 .T...T............CAG... | ========== ====== ====== ====== ======================== ====================================== ================== 7 24 91.7 37 TCCCCGCACACGCGGGGGTGATCC # Left flank : GTCATGGAGGTCCTGAGGCCCGACAATGCTTCAGCCACGGACTGCTCTCGTCCCCGATGGTTGCTGTCACCGCTGCTGTCGATAGCTGCCTAGCCATCGATTAACAGTCAGTTCTGCGTGTCCGGTACTGTGTGGACCGGTGTATCCGATCGTCCGACTTTTTCGACTCGGTACCTCGGCGGCCCGCAAGGAGGCGCGCCCCCTACGGGCTTCCGTAGCGAGGTAACCGACGGAAGGGTCGCCGATGGAATCACCCGAGGAACAGGAAAGGCGCAAGATTGCCACAGTTGTGGAGCTGGGCCTAGTCTGCGAGACAGTGTCTGCCATGCAGGCGTTGACCAGTGAGGAGCCCAGCTTGCCGGCTGGGCTCCTCGCGCTAATGCTGTTGCTGTTGGTGAGCAGCCACTCACCCAAGCAGTAACCTCGAGGGGGCGTCGTTGCCAACGGCGTCCCCAAAACCCTTTGCACTTGCAAAGGAGGCTAGCAGACAGGGGGTCTGC # Right flank : CGGGGCGCACACACCGGGGGACTACCTGGCCGGCCTGTTCCCTGCCTGCGCGAGTAAATCTCACGGTTGTAACCGCTGTCACCCAGGTTTCGAGGTCGGGGCATACTGCTTCAGCCACGCGCAAACCTGTTACGCGGCGGTCGATTGCTCCCATGGGTAGGGCATAGCTTTGAGTCTCTTGACGTGCTCAACGTGGCGTCGGTGTCGCTCTTCGTCGCCGGCCGCTTGCGCATCATCGGCCCAACCCTGAACCTCGGCGATCCACGCCTCGTGGTCTGCGCGCAGCAGGTCGCGAAGCGCTTGGATGTGTTGATCAACGGTCATGGCCTGAACCCCCTAGCCGCTCGTCGAGCCTACCAAGTTCGTACCGACTGTCCTCGACCTGCCGCCGGTAAAATTCCTGATGCTCTTCGTATTGAGTGATGAACGCGCGGGCTCGCTCAATCTGAGCAACAAGCCTCATCCGTTCAAACTCATCTCGCTCTTTCGGCGTACTCAAG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 83202-82809 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898404.1 Salinispora arenicola CNT859 D462DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 83201 28 100.0 34 ............................ CGGTCGTCATCCGTGCGGGGGCGTCATGATGGGG 83139 28 100.0 33 ............................ CGCCGCAACGGCGCCCGCTGGTTTCTCGGACTG 83078 27 96.4 33 .....................-...... GGTGCGCGGTGCGGACAGCCAACCCCGCCAGAT 83018 28 100.0 33 ............................ CGACACGAGAAGTACAGCGAGTTCCTTGCAGAG 82957 28 100.0 33 ............................ CTCGTCAGCCGACCCGGCCGCCCGGCGAGGCTT 82896 27 92.9 33 ......G..............-...... CAGCTCGAACATCATCTTGGGACAGGGGTGGGC 82836 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 98.5 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : GCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGAGGTTGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCCGCATGATCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGGAAAGGACGATCTTGCGGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CGCGTCGACACCGTTCGGGATCATAGCTGGGGTTGAGGTTGAGGCGGCCCGTGTAGTGGGCTCGTCGGATTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTAGGCAGCATCCATACGGTCACCACATCGACCGGTGTGGCGTCGACGCGTCCCGTAGGGGGCGCGAGTTGGGTCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGCCCACATGTAGCGAACAGCCGAGCATTCGACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGAAGCTGCCGGAGGCGCCTACCGTGACGTGACCAGGAACGGTCAATCCTGGTCACGCCCGGGTCGGCGGGCGATCAGGACGCTGCGATCGGCGGTTGTGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //