Array 1 243442-242028 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPN01000001.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 131 NODE_1_length_454836_cov_22.3488, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 243441 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 243380 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 243319 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 243258 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 243197 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 243136 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 243075 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 243014 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 242953 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 242892 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 242831 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 242770 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 242709 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 242648 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 242587 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 242526 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 242424 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 242363 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 242302 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 242241 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 242180 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 242119 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 242057 29 86.2 0 TAA.........T................ | A [242030] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260346-259586 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPN01000001.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 131 NODE_1_length_454836_cov_22.3488, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260345 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 260284 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 260223 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 260162 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 260101 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 260040 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 259979 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 259918 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 259857 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 259796 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 259735 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 259674 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 259613 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //