Array 1 52-3861 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000012.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 52 30 100.0 34 .............................. TAGGTTCTAAGTCATATTCAATTTCACATACTGC 116 30 100.0 36 .............................. ACTAGGTTCTAAGTCATATTCAATTTCACATACTGC 182 30 100.0 36 .............................. GGTGGACATATATTTTTTATGTCAGGATTCAATTTC 248 30 100.0 37 .............................. ATGAGCAGATTTCAAGTTATTGTAGGGCTGTATTATT 315 30 100.0 36 .............................. TCAATCAAATTTAGCAAAAAAAGTCGGTGTAACCCG 381 30 100.0 35 .............................. ACTATCCGTTCCCGGGTTAACCTCAACAAATATGT 446 30 100.0 36 .............................. CTACGGCACAGGTCAAAGGCAATTATCAATAAAATA 512 30 100.0 35 .............................. GATTTAACTTTAGATAAATGTTTTGTTGTTAAAAA 577 30 100.0 37 .............................. CCTTTCTTACCGACCATTTTCCAACGTTCGTTTTCTT 644 30 100.0 36 .............................. TTAAGTACACTGTCCCTGATTGCTTCCTTTTGTTCT 710 30 100.0 36 .............................. ACACCCTCTTTCAATGTCTGCAATAGCCTTTAATAT 776 30 100.0 37 .............................. GCTGTTGGAGTTTGGATTGAGTAGACCACCGCAAAGT 843 30 100.0 37 .............................. TTCCTCCTTAAATAATAATTATAATATTTGCTTAAAT 910 30 100.0 36 .............................. AATACTGATGTACAAAGTTTCATGGGTACTTTAAAT 976 30 100.0 38 .............................. GAACCCCCTTGTCCCACTTGTTACCAAATATTATATGA 1044 30 100.0 35 .............................. GTAAAATAACAATAGATTTTGATAAATTTGAGACG 1109 30 100.0 37 .............................. AGAATATCAATGTGAGGCACGCAGACGAATGAAAGCA 1176 30 100.0 37 .............................. GAAGAATTGATACGTAAAAAGCCTTTTAGGTTATTTA 1243 30 100.0 37 .............................. TAATTACACCAACCTTAATACTTGAAAATTCTTTCAT 1310 30 100.0 37 .............................. AGCAATGTTTGATATGTCTATTATCCCGTCATGGTCT 1377 30 100.0 38 .............................. ATCTTCTTTTTCATCCATAATTATCAAGTCCCTTCTGG 1445 30 100.0 38 .............................. ATTTGTCAATTGTACTGCTCATTGCATTTATTGTTTTA 1513 30 100.0 37 .............................. GTAGAGGAAGGTGTAAAATTATGATTTATTTATATTG 1580 30 100.0 36 .............................. ATTTACAGCGAAAACAGCCTTTCAAATTTTAAATTT 1646 30 100.0 38 .............................. TCTGCTAATTATTCATTTGAAGAATTTTGTTCAGAGTT 1714 30 100.0 37 .............................. GATTCTGGTGATATTTGCGAATGTCAAGAAGATGATA 1781 30 100.0 38 .............................. TTAATATGTTCATACATTTATAGTTGTCAGGCATGGGG 1849 30 100.0 38 .............................. TGGTGTTTATGTCGCAAGTGAGAATGATGCATGTAGAA 1917 30 100.0 35 .............................. TGATTACGGTCCAAATTATTATAATGCAAAATTGC 1982 30 100.0 37 .............................. GCAGGTAAACAATGCAGATGTTCAGACATTTATGGGT 2049 30 100.0 35 .............................. CGCCGGTGACAGAGTAATCGCTATACCTGACGTAT 2114 30 100.0 35 .............................. TTATGTACTTTAAGACGTACATAACTGCTTTTATT 2179 30 100.0 35 .............................. CATATCATCCGCATTTTCATTGTATAGTATTTAGT 2244 30 100.0 34 .............................. CTATGCTATATGGCATAAAATGGGGTTTTGTAAC 2308 30 100.0 38 .............................. TTTTTCTCGTGATGATTATGAAGAATTTGCAAGGAGAA 2376 30 100.0 38 .............................. GATGAAATGAAGCGTTTTGCATATTATGCAAAGAAATA 2444 30 100.0 34 .............................. TTAATATTTTGAGTTATGCAAGGTCTTTTGGTAT 2508 30 100.0 37 .............................. CCAAAAGATTCTCATAAGCTAGTGTTGTCTTTGAAGT 2575 30 100.0 39 .............................. AACTGTATTAACTCAGAACATTATGAGCATATGTCAAAA 2644 30 100.0 35 .............................. TTCATAATTATTAAAATCAAAGCCACTCGTAAGAG 2709 30 100.0 38 .............................. GAAATACTCAAGACTGTAACTGTTGACGGTGTTGCTCT 2777 30 100.0 36 .............................. CGTAAAAAATGGTACGGACGTAATTAATTTATAAGG 2843 30 100.0 34 .............................. CCCACGAATCCCTATCTGACCTTTTAAAATCTCG 2907 30 100.0 35 .............................. AGGGACAAAAGTCTGATGATGTATCTCAAAAAGAT 2972 30 100.0 36 .............................. AAATTTTAGGAGTTGAGACTAAAGGTAAACAGGATA 3038 30 100.0 37 .............................. TTGTGGATGGTGCAGCCTTGGGAGCAGGTGCAATCGG 3105 30 100.0 36 .............................. TGAAGCGCAAGAATTTGTTGATGAGATTTATAGTGT 3171 30 100.0 36 .............................. TTAGGTCTTACAAGGAAGTTTCCTTTTTCTATACCA 3237 30 100.0 36 .............................. GTCATACATCGTAAAGTAAATAATTACAAAATTGGA 3303 30 100.0 35 .............................. TGAGATGGATTCGTGCAATAGATTAAGTGTAAGGG 3368 30 100.0 35 .............................. TGTTTCGCGTAGGCTTGTTTGTTGCGGTAATACAA 3433 30 100.0 36 .............................. GACTTGCAGGCGGGTCCCCTGCCTTTTGCAACTAAT 3499 30 100.0 38 .............................. TCTTGGAGATTCCTGCTCCGCCACTAAAGCAGTAACCG 3567 30 100.0 37 .............................. CTAGAAAAGAACTAGCAAAAGAGTTCTCAAAAGCTAG 3634 30 100.0 36 .............................. AGATACAACTGTCATTTTTGCCTGACCACCGAAACT 3700 30 100.0 37 .............................. ATACCCTAAGATATCTGTACCCCTGTATTACTATACA 3767 30 100.0 35 .............................. TCAAAATATTTAATTAACTCATCTCTTTGTTCTTT 3832 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 58 30 100.0 36 ATTTACATTCCACTCTGTTTATATTAAAAC # Left flank : TTTATATTAAAACTTACATTCATCACTGTAATTATAGATTTTTATTAGCTTA # Right flank : CGCTGACGCCGAAAACATTCAATTTTCAAGGATCACATTTACTGTTTCTGTCGATGTTATAAATTAATTATTAAATATACGACAGATTTTCTTTTAGAAATTATTTACATCTTAATTTTACACGCATCAGAGGTTCTGTCAATCCCCATGGAATTTTACAGTATCAGAGGTCGACAGAAAAAATATTTAAAAGAAGTTTGATGTTTTGTCATCTTCCTTTCCCCAAAATTCTTTCTGCATCCATCTTTCCTCTCTACTTTTGAAAATAATTACAGAATCTCTTTCTTTTCTTATATGCTTTTTAAGTTCCAGCTTTAGCTGTTGTAACAAAGCTGGAGTGATATCTCCTTCAAACACAGATTTCTGCACATGTGTCAGGTATTTTTTGCATATTTTGAAAATATTCCGTGATGCTTTTGCTCCGTTTTCATCCACTTCTACGTCATATATCAGAACTATATACATAATCACCACCAAATTTTAAACCCTTCATATTCCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTCTGTTTATATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 32-1127 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000104.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 32 32 100.0 33 ................................ TTTAGCAAGAATGGTTCAACATCAAGAGATTAA 97 32 100.0 34 ................................ TACAGGATGCTTATATGATGTTTCTAGCTCTGAC 163 32 100.0 37 ................................ AATGTCCCTATAATTTATAATCTTTATGTACATTCAC 232 32 100.0 33 ................................ ACTCAACTATATCTCCCCCTTCTTTAATATCCT 297 32 100.0 34 ................................ ACAGCCTACTTGTTGACAGGGAAAATGACGTATC 363 32 100.0 34 ................................ TATGCCTAAATGGGTAAGACAACTCTGTCCAAAG 429 32 100.0 34 ................................ CGTTGGCTCTTCACCTTCTACCGCCTCGGGATAT 495 32 100.0 34 ................................ TTGACCATATTTGTGATTATTTTTTGCATAGTCT 561 32 100.0 33 ................................ TGTTATAATTGGCTTTGCAATAGATGTCCAGTA 626 32 100.0 34 ................................ ATCACAACTGAAATTATGGCTTATGCCTTTAGGG 692 32 100.0 34 ................................ TAATTGTGGTCAAGAATGTTTTGAAAATGATTTT 758 32 100.0 35 ................................ CGTCAAAGGTTTATGCAACAACTACAAAGTATCCG 825 32 100.0 34 ................................ TTGCAGCTACAATTAATTTGATAACTGCGATATT 891 32 100.0 36 ................................ ATAATCTGGTAATTTTTTATTTGTTTTGAAATTATA 959 32 100.0 37 ................................ TTTCAATACAAGGAATATTACTAACACCCTTTTTAAA 1028 32 100.0 33 ................................ TTTTTTAATATTACTTATCTCTTGAAACTTTAT 1093 32 84.4 0 ....................CA....A...TC | TA,A [1113,1119] ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.1 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : ACAAGAAGTGCCTTTTATACCAGACAGGATAG # Right flank : CAAAGAAATAGTTAATTGAAATGAGATGCAGCTTTAGATATTTACTCTATATGCAGTATATAGGGATATAATGCGTAATTTTGAAAATACCAAGAGGGGATATGTGAATTAGTATAGGGTACAATAATTATTTTTGATTATACATAAAATGGAAAATTTATAGGACAGAAAACTTTAGCATTACTAAACAGTGCCATGATTATAACAATCTGGATAAACGGGTATACCTTTACGTATGCTAGCCATGTCTTGATTTTCTTATTAATTATGCAAAAGAACTTGGATTTGAAGAAATTTCTGTAGGAGTTGATATTGATAATATAGTTGCTGAACACCTATATGAAAAATGGGTTTTATAAACATAATATTTGAAAATGCAATAATTCAATTTTAGGAATATACATAAGTTGTATAACCTTCCCTTTAGTATGGAAATAATTAGTATAAATAATCATTTTCAATTAAGGGGTTTAATATGACTAAAAGGATAAAAACAATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 1 1731-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000125.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1730 30 100.0 35 .............................. ATAATAAATAGGGTCAAACCTAGTAATATTGTTCT 1665 30 100.0 34 .............................. TACTACAGTTATCAATATTGCGGATAATATTAAT 1601 30 100.0 36 .............................. TTACAACTAAATTCTAAAAAAGTTTTTCATATCCTG 1535 30 100.0 36 .............................. TTATATTGTGGATAACTTTTAATTATTAACATATTA 1469 30 100.0 36 .............................. TCTACAGATACACAATTGTAATTTATATTGATAACA 1403 30 100.0 37 .............................. CATAGATTTTGTTAAATAGGGAATACTAACTACTATA 1336 30 100.0 36 .............................. TTACCTAGTTGTTTCTGCTGAAAATTAAATCATCGT 1270 30 100.0 37 .............................. TTATATACTTATTATATGTATTTGTCAATACTTTTTA 1203 30 100.0 35 .............................. ACTGCAATCATTTTATATTCTTTTTCAGCTTTCAA 1138 30 100.0 37 .............................. TATTTTGCTTTCATCATTTAGCTTTTCTAAACTCATA 1071 30 100.0 34 .............................. TTAGAATCACAAATAGACGGAGCAAAAAGCACAG 1007 30 100.0 35 .............................. TTTTCATTGAAGAATTTTTGCATTCTATCAAATAA 942 30 100.0 36 .............................. CTAACTTCTTTCATTTGCTCAATTACCCATTTTTAG 876 30 100.0 36 .............................. TAAAATAAATAAAGGTTATATTGAAGGAGCAAAAAG 810 30 100.0 37 .............................. TATAATGGTATCCAATGTTGCTCGTAAAAATCATATC 743 30 100.0 37 .............................. CTAATAATCTTTGTGAAATTGCATTAAAACCGTTTAC 676 30 100.0 36 .............................. TAAAATAAATGCATAAAAAGTTTGACAAACGTGTAT 610 30 100.0 36 .............................. CCCTATACCGTAAAATAGTTTTAAATGGATTCTGTG 544 30 100.0 38 .............................. AAAAGTGGTGAGCTATCCCATTTTTATCCCTGTTTTTA 476 30 100.0 36 .............................. TTACTTTGTATAATATTTATTGCCCAGTTATACATA 410 30 100.0 36 .............................. TCATATGATTATTCCAATTATTACTATCATCATTCC 344 30 100.0 36 .............................. CTAAATTACCTTTTGATGTTTTGAAACTAATTTGAT 278 30 100.0 37 .............................. AATATTTGCGGGTTAGGTGCTACACCGCTTTTAGATG 211 30 100.0 35 .............................. GTAGTATAGTCTTTAGGGACTGGCATTTCAGCCAA 146 30 100.0 36 .............................. TGTGTCTATGTTTATTTTAGACTGTTTTAGCTGATT 80 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : GAGGTTATA # Right flank : CTATATCTTACCTGTTGTATGTTGATTAGTATGATCATGTTTATAGAATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 806-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000139.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 805 32 100.0 34 ................................ TACAACTTTTGATAAAATGCCAGGTTACAAAGGA 739 32 100.0 33 ................................ TATCCACGATACCCTTATCTGTCTTGGCTCTGG 674 32 100.0 35 ................................ CTCTTTAGCGTAAATGCAATATTTGTAGTAGCCAA 607 32 100.0 36 ................................ CGTTTGTTGGAATTGAACCATTATCAAAATGATATA 539 32 100.0 34 ................................ ACAGCTAGTTCCATGTCATTATTCCAATTAAGAT 473 32 100.0 34 ................................ TTTTTCAAACTTAATCTATTGCACGAATCCATCT 407 32 100.0 34 ................................ CTAAGTATGACAAACCCGGTGAAAACATGGATAC 341 32 100.0 35 ................................ TTCCCGTTGATATGGGTCTTTTTTTGTTTCGTCTT 274 32 100.0 35 ................................ CTTACCCCTCCATGTTAGATTCATAACTTATCCTC 207 32 100.0 35 ................................ TAGTGGCTTAGTTTTTGAAACGGTTATTCGCCGTC 140 32 100.0 36 ................................ ATAATCTGGTAATTTTTTATTTGTTTTGAAATTATA 72 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 100.0 35 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : ATCAAAAGATATGAATATCATGTATTTTAACAAT # Right flank : TCGTTAGGGGTAAATACTAAATACATTCCAAGCAAGTCGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 1 2-559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000147.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2 32 100.0 35 ................................ AATCATGTTATTAGTACAATTACATTTCATACTAT 69 32 100.0 35 ................................ CAACAATGGCAGCTACGGATGGAGATTCTACAACC 136 32 100.0 33 ................................ TCAGCCTCAGGCCACACACCTGCAGATGCTGGT 201 32 100.0 33 ................................ TCCGAAGCAATTAGAAGGGTGTTGAGAGCAGGT 266 32 100.0 32 ................................ ATTTTAAATTATCTCCTTTATTTTAATATAAA 330 32 100.0 34 ................................ TATACCGCTTGACCCAAATTCTGTGCCAGATTAT 396 32 100.0 33 ................................ TGCACCATTGCTGTAATGTACTTTGAATGTAAA 461 32 100.0 35 ................................ TTCATCCTTATACTTTTCTTTTAAGTAATTTTTAA 528 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 100.0 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : AG # Right flank : TATTCAGGCAGCATTGATGCATTTACCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 1 322-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000016.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 321 32 100.0 34 ................................ TGCATAGGCAAGGGAAAGCGTGAAAACATGAAAA 255 32 100.0 32 ................................ TTCAAAAAATGATGGATATTAAAAATGAATTT 191 32 100.0 35 ................................ ATGACATAAAAATGCATTTGAAATAATAGTAAAGT 124 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 CTCACATCTTGTACACATGCGTCAGTTGCAAC # Left flank : CTCCTTTCCCGAATACGGACAAACCGTGCTGTAACGAAATATTATATGTATTACCTATATCTCCGACTTCAAACGGATAATTTGTAAGTAATCTTTTTTTTACTATTTGAACTTTTGATGAGCAATTCCAATAATCTGAACAGTCCGGATTTGGAGTTCTGGAAGGGTCATCGATTTCGAATGAAACTGTGGAAAGAGATTCCCTTTATTGTCTATTGCAGAATACGGACTGCTGCTGTCTGCCTGCTTACGCCCGAAAATTTCCACACCCATTTCATCGGCTAGTTTATTTACCCTTTTATCTAGTCCTCTGTATCCTATTGTATGTGGGAGGTCATGAAACCGCCTCCTTTGGTGTATAAATGTTCTCAGATATTCTATTGCAGTATCGTTAGGATACATAACTTCTGATAATAGGTTCCACATACCGTAAAAGACACAATCATAGTATGCGTCAGTTGCAACATAAAGAGATTTATAAATGTTTAAAATCTGACTTT # Right flank : CGGCTCACTTGCAAAAAAGCTTACCAATTACATTAGATTGGCTTAATGTGCGAATCAAGAAACTGTTACAACTCAAACATATGTATAAAACGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACATCTTGTACACATGCGTCAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 48236-48726 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000034.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 48236 32 100.0 33 ................................ AAATCCCAATCAAACTCTATGAGGTCAAGTATT 48301 32 100.0 33 ................................ TGCAAGCATATCCGTTTGACTTGCTAACCATGG 48366 32 100.0 33 ................................ GACTGGAGTAGCATTGAAAGAACGTCCGGAAGT 48431 32 100.0 34 ................................ CAAGTAGCTCCTACAGGGCATAAATTGCGAGAGG 48497 32 100.0 35 ................................ CGGCAGTTCGGCAATCTTCAACGGCGACACAATCA 48564 32 100.0 34 ................................ AAATCCTAAGTCATGTCTGATTTCGTACCAACCT 48630 32 100.0 33 ................................ AGTTGAATTTTTAGTTAGGCACTAATCTTTTGA 48695 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : ACGAGTATCCTCCATTTTTATGGAAGTAGGTGAATTTTATGATGGTACTTATTACATATGATGTTAATACTGAATCAGAGGGTGGAAAAAAGAGGTTAAGACGTGTTGCAAAACAATGTATGAACTATGGACAACGGGTTCAGAATTCTGTTTTTGAATGTGTTATGGATTCTGCAAAATGTAGGGAAGTTAAGAATAAATTGGAAAAAATAATTGACAAGGAAAGGGACAGCTTAAGATTCTATTATCTAGGTAACAATTACCAAAATAAAGTAGAACATATTGGCATAAAAGAATCTTTTGATGTAGAAGGAACATTAATTATATAGTGTGCGAATATATAGCAAACATTAAAAGCTAGGGACATTCGCACCTAAAATATAGTATTTCATTAATCAATTTTTAATTATTGATATTAATATTTTTTGTAAATAGACTTTTTATGTTTATTTTTTGTGCAAAATAAACAAGTAGATTTATTTCTTTTGTTTATTTTTGCT # Right flank : AAATAGCCATTAAGAAGGTTATAAAATCAAGCCGTCGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 28564-28793 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000049.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 28564 30 100.0 37 .............................. TGCTTTCATCGTGCCATTTTAAACCTCTAGCCTTATA 28631 30 100.0 36 .............................. TTCTTTGTATATGATACTGACCATTGATAGTCTTTC 28697 30 100.0 37 .............................. GTAAACTTTCCTTCTTTTTTCATTGCTGCATTTACTA 28764 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : ATATTAGTATATGATTTTGGTGAGAAGAGAGTAGGCAAAGCATTAAAAATATGCAGAAAATATTTGACATGGGTTCAGAATTCAGTTTTTGAAGGGGAAATAACTGAAGGAAATCTAAAAAAACTAAAAATAGAACTGACTAAAAAGATGGAAAAATCAGAGGATTCAATCATCCTATATACTTTTAACAATACTAGATATACTCACAAAGAAATAATAGGGATAGAAAAAAATGCTCCAACGGTTTTTTTGTGATGTCGATAGGTGATAGTGTAAAAAACATAGGGGTTCGACAGAGTAAGAAAACCATTATATTTGACATAATTAATCAGTTCTAAAACATCTGAAAATCTATATTCTCTGCGGTTTTAGCAAATTCTATTAGTGAAAGGCATGTAAGAGATCATTAAAACCACTTGATAAATATCGATTTTTAATGTAGTTTAAATAGGTAAGCCATATGCATTGATTTTTATGGCTTTTGTTACTTTTGAAAATTG # Right flank : TCAATATAACAAAGAGTATGTAACA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 9-2868 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAA01000054.1 Ruminiclostridium josui JCM 17888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 36 .............................. ACACCTTTTTGTGTCCGTCGCTCTCGTTGTCTATGT 75 30 100.0 36 .............................. AAAATACAAATAAATAATAAAAATTCTTATATATTA 141 30 100.0 37 .............................. TGAACTAAATTATAGTTGCTGTTACGTGGAGTTTTAT 208 30 100.0 36 .............................. AATGCTGAATCCTATAATCAATATGAATATAAGTAC 274 30 100.0 37 .............................. ACTTAATGAATAAGAGGGGCTTTCACACGGGAAATAA 341 30 100.0 35 .............................. CCTAAAATTTATCTCATTTAAAATAATATTCCATC 406 30 100.0 34 .............................. TCTTTACCGAGCTTATGATTCTGTCTTGCATAAT 470 30 100.0 36 .............................. TACACCAGCTGAAGCTGGTAAATCTATATGTCCCTC 536 30 100.0 35 .............................. GCGAATTGGTTCGTATCTGGTGAATTAGGGGACAA 601 30 100.0 37 .............................. TGGAATAGTTATGTACTCTCATAAGATATCACACTTC 668 30 100.0 35 .............................. CTAAATTATTTTATTAATTACTATGCTTATATATT 733 30 100.0 36 .............................. TTTTAGCTGATTCGATATATAATTCATGTTTCTTGA 799 30 100.0 35 .............................. GCTCACAGACAGAAAATATTGTATAAAATCATTGT 864 30 100.0 36 .............................. TGGGTGCGGGTGCTCTTGGTGGTGCTGTTGCATTAT 930 30 100.0 36 .............................. TGTTAAGTAATTCTTCGATGAGATAATTAAGACGGA 996 30 100.0 36 .............................. ACAAAAAAGGATAGCAATAAGCCACCCTTAATTTGA 1062 30 100.0 37 .............................. TTGCCGACTAGGGCGACTAAGAAAAAGTTTTCGGTTG 1129 30 100.0 35 .............................. ATCGAAGTCACTAACTTTGGAATGGAGGATGGTAA 1194 30 100.0 36 .............................. GTAATAAGTGAATGGGTAAATAATGGGAATAACGCT 1260 30 100.0 36 .............................. CCACAAGACAAGTAACTACAAGTTATGGTGGTGTAA 1326 30 100.0 35 .............................. GAAGGTTGAAAAGACTATTATTGATACTATGAAAC 1391 30 100.0 36 .............................. CATACAAAAATACAGGACTAACGCCTGTAATATTGA 1457 30 100.0 35 .............................. CAGGTTTAACAATAAATTCAGTAAGATAGTCAGCG 1522 30 100.0 35 .............................. TTTTTACAATTTAAGATGAATGGGTCCGCATTTAG 1587 30 100.0 36 .............................. ACTATAACAACAAGAATATATTATCTGTCTATCATT 1653 30 100.0 37 .............................. TTCTGTATGTATCTTAGTCCCGTTTTTAAATACGTTG 1720 30 100.0 35 .............................. GAAATAGCAATATTAGAATTGTCAAAAAGACTGGA 1785 30 100.0 37 .............................. AAAGTACAAACCGCTGCTACTGCTGCAAAAAATGCAC 1852 30 100.0 35 .............................. ACTGAATTATCTATAGAAGATATTGATGAAACTAT 1917 30 100.0 35 .............................. ACGAACGAAATAACTAAGAATATTGAACATATTAA 1982 30 100.0 37 .............................. GCTGAAAGCGTAAAACGACTGGGGCCAAAACGGCCTC 2049 30 100.0 34 .............................. AATATAACTTTTATTTGATTATTGGAGAGCCTGA 2113 30 100.0 34 .............................. AATTTAGGTGGTATAGACATTTTGGGATAATCAA 2177 30 100.0 37 .............................. CTATACAAATAAATCATAACAACCTCCGTCAGCTTAA 2244 30 100.0 35 .............................. ACATCATAATAAACATATTGCCCGTCTGTACGAGC 2309 30 100.0 37 .............................. GCCGCAAGAGCCGCCAAAGCGTCTGTTTTTACTGTAC 2376 30 100.0 36 .............................. ACAAGGTTCTCTTTTTTTGTAGGTATAGGCTTATTT 2442 30 100.0 35 .............................. TTTAATGTGACCTTCAGCGACCTTGTGGGTATTAC 2507 30 100.0 36 .............................. TCAGGTTGTCGAGCTCGACATAACAAAATGCACGGT 2573 30 100.0 36 .............................. ATCCGCAAACAATAGCAGTTAAAGGTATGGTTGATA 2639 30 100.0 38 .............................. TAATATAAGCTTTGATGTAAGCAGTATATACGGCACAA 2707 30 100.0 35 .............................. AAACTATTGACGTTACTGTTGAGTGTGAAGTCGCA 2772 30 100.0 37 .............................. CAAAGCGAATCTGATGATAGCGGGTTTTATACAATGC 2839 30 83.3 0 .......................C.GTTT. | ========== ====== ====== ====== ============================== ====================================== ================== 44 30 99.6 36 GTTTTAATATAAACAGAGTGGAATGTAAAT # Left flank : TGCGTAAAG # Right flank : TATTTACTCGCCATTGACCAAGTTCTATATTAGCCGTAATCAAGATACTTCCCAAACTTGATTTAATTGCATTTCGCAATTAAGTATACCTGATTATGCTTTCAAAAATGGCACAGAAATGTGGTTTTTGAAAAAATTTTAATATTAAGGTTACTATTAGACAAAATGAATATATAATTGTGTAATAAAATATATTAGTCAAGTATACAACTTTGGGAGGTTAATATGAAAATAGCAAGTGAACGTCTCAGTTTCAGATTCTTTACCCATGAAGATTTTCCGTTATTCTATTCTATATTTTCAAATGAAATTGTAATGAGATATGCATGGATAGATAAAATAGACAACGAAGAAGATGCTCGTGCTTTTTTTGAGGGATATATAAATACAGATGAGAATATTAATAGCGATGATTCCTATGCCTTTGCAGTTTTTTCAAAAAACGGAAATGAATTTATAGGCTTTGCAGACGTACTGGTTCATAGCAGAAATAGTTCAGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATATAAACAGAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //