Array 1 204065-205922 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIW01000007.1 Salmonella enterica subsp. enterica serovar Hadar strain 3137 3137_7_length_213318_cov_24.9652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204065 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 204126 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 204187 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 204248 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 204309 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 204370 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 204431 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 204492 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 204553 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 204614 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 204675 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 204736 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 204797 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 204858 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 204919 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 204980 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 205041 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 205102 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 205163 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 205224 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 205285 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 205346 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 205407 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 205468 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 205529 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 205590 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 205651 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 205712 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 205773 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 205834 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 205895 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9127-10805 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIW01000018.1 Salmonella enterica subsp. enterica serovar Hadar strain 3137 3137_18_length_76062_cov_23.6503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9127 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 9188 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 9249 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 9310 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 9371 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 9432 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 9493 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 9554 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 9615 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 9676 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 9737 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 9798 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 9859 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 9920 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 9981 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 10042 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 10103 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 10165 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 10227 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 10288 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 10349 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10410 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10471 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 10532 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 10593 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10654 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 10715 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 10776 29 100.0 0 ............................. | A [10803] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //