Array 1 361278-362892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBB010000001.1 Salmonella enterica strain 108 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361278 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361339 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361400 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361461 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361522 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361583 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361644 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361705 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 361766 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 361827 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 361888 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 361949 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362010 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362071 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362132 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362193 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362254 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362315 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362377 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362438 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362499 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362560 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362621 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362682 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362743 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362804 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 362865 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379025-380501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBB010000001.1 Salmonella enterica strain 108 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 379025 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379086 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379148 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379209 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379270 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379331 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379392 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379453 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379514 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379575 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 379636 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 379697 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 379758 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 379820 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 379881 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [379923] 379923 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 379984 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380045 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380106 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380167 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380228 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380289 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380350 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380411 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380472 29 96.6 0 A............................ | A [380498] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //