Array 1 150523-151038 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL362964.1 Porphyromonas sp. KLE 1280 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================== ================== 150523 48 100.0 30 ................................................ TTGTCGGTGGCTATAGGCGTAATATCCCTC 150601 48 100.0 30 ................................................ AAGATAGTGATGTTGTGCCACTCGGTGCGG 150679 48 100.0 30 ................................................ GCTTCTTTGCGGTGTTCGACTCTGCGACGC 150757 48 97.9 30 ...............G................................ GGTGACATCATCAAAGCCCTACGGCAGTAC 150835 48 93.8 30 ...............G........T.G..................... TCCCCTGCAACGACGCTGCGTGAGGTGTAG 150913 48 100.0 30 ................................................ GATACGAAGCGGTTTCTTTGGGGGTATGGG 150991 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ ============================== ================== 7 48 98.8 30 GCTGTATTAGCAAGTATGAAGGTACGAAATCTGAAAGCTAATCACAAC # Left flank : CTCTTAGGGGCTTTGCTCGAGAATAATTGCGCTGTCGTGACCTGCTCAGCGACGCACATGCCCTCGGGGCTACTCCTCCCGCTGGACGGGCACACGCTCTGATCTGCCTACGGGTACGCCTAAGGAGCGCAAGACGGCTAACAGCTTCCGCCAAGAACTCCTGAAGGATGGCTTCACAATGTTTCAGTACTCCATCTATATGCGCCATTGTGCGAGTATGGAGCAGGCACAGACGCATATGCGGCGGGTCAAGGCGATGCTCCCCGATGAGGGCGAGGTGGTGATCATGACGCTTACCGACAAGCAGTTTGGTATGATGGAGCACTTCTCTTCGCGCAAGCCTACCGATGCTATTCAGCTCCCAGGACTCTTCGATATGCTGTGAGATCTGGGATCGGAAAAGTCGCTAAGTAAAGGAAAAGCCCGTGGATATCCACGGGCTTTTCTCTTTCTAAATCCTCCTGCTAAGTACTTGTCCCATAGACTCCTTTGCGGGGTCT # Right flank : CAGAGCCTTATTTACTACTGCACATTTGGTGGTTATAGCGATAGGTTGTTGCTCCGCATAGGGATAAAAGTTGCGGACGAGTGGTCGATAAGTTTGGGCTACGTACGTGGCTCTAATATCTACGTACGTGGATATTTGGATTTACGTGCCTGGTCTTTAAGACTATGTACATAGATAGAAGAATACCACTACGGGAAGACGCTTTTTTCTTCACGAGAACGATGCTTTTCCCTCCGCTGGATAAGCGGAATACTTGCGATAAGGCGCAGGGCTTGCGTATCACTTCGGAGGGGTATAATCGTGTAAACCACTTCTGTCTTCCCGGCTGGGTATTGCTTGCCAATCAGATGGAGATGTGAAGCTATATAGGTCGCTGGGTTGACCTATATAGCTTCGCTTCGTGACCTATATTGGTCACGCCGCCGACCTATATAGGTTGACTCGCCGACCAGTATAGGTTGGTAGCACCTCCTTCAGTAGCTGTCTGAGAGAGGGCAAGG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTATTAGCAAGTATGAAGGTACGAAATCTGAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 285390-280911 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL362962.1 Porphyromonas sp. KLE 1280 Scaffold0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 285389 33 100.0 36 ................................. TTAACTTTAACTTATGATAACAATCATCTTCCTTGC 285320 33 100.0 34 ................................. TACTAAGAAGTTACTTAGAATAGCTTCGTTATCA 285253 33 100.0 33 ................................. TTAGGCTTGATATTACCGAGAGACTTATAACCA 285187 33 100.0 34 ................................. ATCGACACAGCGACATCCCACAGGGTCTGCCCAG 285120 33 100.0 34 ................................. TCTGGTGCAGCCAATGCCGTAGGCGATGCTGCTA 285053 33 100.0 34 ................................. ATTTACTCGTCTCATAGCTCTACAGGTCTGCATA 284986 33 100.0 35 ................................. AGGATTTAGGCTTGCAGCCTATTATGTCACATGAG 284918 33 100.0 33 ................................. GCGCGCCTCGTTTACGTGTATGGCTACGCTTAC 284852 33 100.0 34 ................................. CGGCAAATCTGTCCTTCTTGGCTATGCCCCTCGC 284785 33 100.0 35 ................................. AGTACCGTCAAAGCGGACAGAGAAGATACTATCAA 284717 33 100.0 36 ................................. TCGGTGTAGACAATACCGCTTATACGGTTATACCTA 284648 33 100.0 33 ................................. GCAATATCTGATAAAGCGTAGAGCGCTCATAAG 284582 33 100.0 35 ................................. TCCGTTAATTTTGACGGCTCTGAAAAAACAGACCA 284514 33 100.0 36 ................................. TGCAACTCCTGCGCCTGCAGTTGGTGCTAATGTCGT 284445 33 100.0 35 ................................. TCAAGTTCAGAAGAACCTTGCTGATGCCGATGCTG 284377 33 100.0 35 ................................. AACCCCTTAGAGGGCGCTATCGGTGGCGAAGCGTA 284309 33 100.0 37 ................................. CCATTCTAACGGCGCAGTAGCGTAGCGCGCCCTATAA 284239 33 100.0 34 ................................. CTCTTCCGTAAGCCACTCAAGGATGCCGTGCTGA 284172 33 100.0 33 ................................. GGCGATGGGACGCTCCTGCGTGCCCTGGACAAG 284106 33 100.0 35 ................................. ATACCACCATAAACGGCATCCATAACGACACCAAA 284038 33 100.0 37 ................................. GTGAGCTCCTTGACCTTGACGATCCCTCCGAGCGAGC 283968 33 100.0 35 ................................. TGTATCACGTCTTCCAAAGTCATCAGCCTTCAACT 283900 33 100.0 34 ................................. TTGTCCAGCAGGATAGAGCGACCAAGACCGAACT 283833 33 100.0 34 ................................. CTATCTCCTTGTGGTGAATTAGATACCCGAAAGG 283766 33 100.0 35 ................................. TTGCACTCCTTAGGCTCATCCTCCTCTCGGATGCA 283698 33 100.0 34 ................................. TGGTCGCCCGCTCTTTTCTCCTGACACGAGGATT 283631 33 100.0 33 ................................. GATGAGGGAGATACCAGCGTCTGCCGTTGCGTC 283565 33 100.0 34 ................................. TCAATGGTTACATTGTCGAGTCTTTGGGAGAGGT 283498 33 100.0 34 ................................. TTAATCGCTTGCAACGCCAGGATGGTACGTTTAT 283431 33 100.0 35 ................................. TTGAAACGCAAGGACTAACGATAGACAATGGCAAA 283363 33 100.0 35 ................................. GAAGATGCAGGCGTGGACTACAAGAAGCTCAAGAA 283295 33 100.0 36 ................................. TACTATAGCTACGACCACTAAGGTTAGCCATGATAA 283226 33 100.0 35 ................................. CTCTACCTCACGCCACGCTGGAACGCCGAGGGCGA 283158 33 100.0 33 ................................. TAAGTTATCAGATGACCGTGTGAAGAAGAAGAA 283092 33 100.0 34 ................................. AAAGAGCAGCTTGATCGCCTTTCCGACGTTGCCC 283025 33 100.0 34 ................................. TGGAAGAACTCATGGTGCGGTGGTCGCACCCATC 282958 33 100.0 34 ................................. ATGAGCGAACAGACAACGAGCTTACCTACAACAT 282891 33 100.0 35 ................................. GCGATAAGGTAGATCAGCGCCTCGGTGGCGATGCC 282823 33 100.0 35 ................................. ATAAGTGCGCTGATGGTTACTTAAGCTGTGCGATC 282755 33 100.0 35 ................................. TCGGTCTGTGCAGTAGTAATAACCTCGGATATATC 282687 33 100.0 34 ................................. GTTTTGTAAAACCCTCAGAATTAGACTATTATGA 282620 33 100.0 33 ................................. CACGAGGTCCCCCACGACAATTTGTTATCTCCA 282554 33 100.0 35 ................................. GCTCTTGGTATAGCAGTTAGTGAGCAACCGACACC 282486 33 100.0 34 ................................. TGTTTTCTGAATTTCAGTAAGCGTCATTTGAGCT 282419 33 100.0 33 ................................. TATTCAACCCGCTCTTACTAAGTTAATTACGGA 282353 33 100.0 35 ................................. TCAAGTGTATGCGTCTTGTAAATGAGGAGCTAGGT 282285 33 100.0 36 ................................. ACCGCTGAGGACTTGCGTACTCATCCCCGCGATGAG 282216 33 100.0 34 ................................. CATCCATGCAGGATAGACAAGCGGTGGCGTCGGC 282149 33 100.0 33 ................................. TTCTTAAAATCATTACAAAGGTATGGAAACTAA 282083 33 100.0 35 ................................. GACGAAGAGGACTAATATACACAAGCGCCCCGCCG 282015 33 100.0 34 ................................. TAGTCTTAGTACTCTCTGTACCAGCATTAGTATA 281948 33 100.0 34 ................................. AGGGGAACGTAGTCAAATACGTGGCTCGCCACCA 281881 33 100.0 34 ................................. GGCGTAGACTATCGGAACTAAGTAACCTAATAAA 281814 33 100.0 34 ................................. ATATATAACGCTAACGGCACTGCCCTACTTGTTA 281747 33 100.0 35 ................................. CGCTCTAAGGCTTACCAGCCCGCTGGTGAGCCTGC 281679 33 100.0 34 ................................. CTGGCTACTTGGCGGACTACGTTACTGGGATTGC 281612 33 100.0 33 ................................. GCTCCGAAAGGACGCTATCCCCGCGCTGGAAGA 281546 33 100.0 32 ................................. TTCTGCTCCAGCTGTGCAGGCTAAGCTTACGC 281481 33 100.0 34 ................................. CCATCTTCTGGCGCAATAACGTAGTGCGCCCTAA 281414 33 100.0 35 ................................. AATTATGTGCCCAAGTCAGACGGAGGCGCAACCAT 281346 33 100.0 35 ................................. AATTATGTGCCCAAGTCAGACGGAGGCGCAACCAT 281278 33 100.0 34 ................................. ACCCTTGTCCCTCCTCGCTTTGTTCTTGGTGACC 281211 33 100.0 35 ................................. GCTATCTCCCGTAGCTCTCTGAGTAGCTCGGTGTA 281143 33 100.0 34 ................................. TCCACCTCCTCGGCTGTGAGAGGAGTTAATGGGG 281076 33 100.0 34 ................................. ATTGAGACCTCTTCGAGCTTATTGCAGCCTGAGA 281009 33 97.0 33 ....................T............ CACTCTGTGCTATCCTCGGTAAACTCGCACCCT 280943 33 93.9 0 ............................A..T. | ========== ====== ====== ====== ================================= ===================================== ================== 67 33 99.9 34 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : AAGCGCCTCCGCCAAGTAGCCCGCATCTGCAAGAACTACGGGCAGCGTGTCCAAGCCTCAGTCTTCGAATGCTTGGTCGATCCAGCACAGCTCGTAAGCCTTCGCCATGAACTCCTCTCCGTGATCGATGATCAAGAGGATAGTCTTCGGATCTACCAGCTAGACAAGCACTACCAACGGCAGATCCACGTCTATGGCAAGGTTACCTCCTTCGAGATCGAAGGGGAACTCATCGTGTAGCCTCCACTACCCCAAGCCTCTTCCAAAAATCCTACTGACCTCTCCCAACTCACCTTCTCCGTAAGTCCCCAAGCACATCCACGCAAGCCTCCAGCGAACCCCAAGCGAACAGTTATTTCCAGCATCATCCGCAGGCGCTGGTTATCAAGCACATAAGCAAGAATAAAGGCATGAGCATAGCCCCGACCTTCAGAGCAACACCGCCAGTCGCAGATTACGCTTGTTTATCCGCCCCATAATACGCAACTTTGCACCACACT # Right flank : ATTGACGTTATCCCTCAGGCCTTTTTCGATATGCCTCTAATCACACGTCTATGCTCCAAGGCTATAGGAGTTATTCTCTTAAAGCTTTCCCAAGATAATATCACAACAAGCTTTATTGCTCCTCAACTAAAGGATTAAGGACTAGACTTGTTGATAAGCACTTCTGCTCAACCTACCCATAGGTGAATCGGTAACCTATCATAAATAGGAGATGATAGAATAAAGCAATAAAAGTAGGAGTAGCAACCTATATAGGTCAACGGGCGAAGCAATATTGGTTGACGAACGAAGCAATATTGGTCCACGCACCGACCACTATTGGTTTGCTCGCTGACCAATAGTGGTTGATACAGGGTCTCTACAGAGAGCTCTGTGATATACAGTTTGCCCGCACCGCTTCAAGAAGGCGGTGCGGGCAAGCCATATGATAGTTGAGTGGAGGAAGCCTTTAGAAGTTGAAGTAGATGAAGGGCTGAGCGTCTGCGCTTCTGATCTGGATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //