Array 1 684166-685712 **** Predicted by CRISPRDetect 2.4 *** >NC_017568.1 Staphylococcus pseudintermedius ED99, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 684166 36 100.0 29 .................................... TTTTAATCACTATACGATTATGAAAGCCT 684231 36 100.0 30 .................................... GAACAGTTTGATTTACCTTATCGCTATATT 684297 36 100.0 29 .................................... TGTTTCTGTTTGTTACTTTTATTCTGTAC 684362 36 100.0 29 .................................... TGAACATTACCGAACCCTCTTGTGATTAA 684427 36 100.0 30 .................................... GCGAACAACGGTATGCTTACGATGTTAGGT 684493 36 100.0 29 .................................... TCGCATTAATCAAGAATCAAAAGGGTTGC 684558 36 100.0 30 .................................... AAAAAGCCAGTACAAGGTTCTATGGTTTCA 684624 36 100.0 30 .................................... ATTAAGAACAATATAAATGTATCGATTTCA 684690 36 100.0 30 .................................... GCAATGGATCAATTGAAGGCTCGTCAACAA 684756 36 100.0 31 .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 684823 36 100.0 29 .................................... GAACTCTTAAAGTATCTTTTAGGACACTT 684888 36 100.0 30 .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 684954 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 685020 36 100.0 29 .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 685085 36 100.0 30 .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 685151 36 100.0 30 .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 685217 36 100.0 30 .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 685283 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 685348 36 100.0 29 .................................... CATTACCTTTGTTTGCGTTGTTTGATTCT 685413 36 97.2 29 ............................A....... GTTAACTGAACTCGAGTGTTGGCGCTTGA 685478 36 97.2 30 ............................A....... ACAGGCTTAAAGAATCATTACAGTTTGCTA 685544 36 97.2 30 ............................A....... TTGACCGTGCAAAAATTAATCACAAGGCGC 685610 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 685676 35 83.3 0 T........T................-.CA.C.... | TC [685708] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.8 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATATTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //