Array 1 493237-493570 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPH01000001.1 Salmonella enterica subsp. salamae serovar 53:lz28:z39 strain BCW_1521 NODE_1_length_1193104_cov_0.607004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 493237 29 100.0 32 ............................. ACAGCCACAACTTTTTGACTTACCGCTCTCAA 493298 29 100.0 33 ............................. CTGGAGATAAACAAAACCCGCCAGTGGCCTGAG 493360 29 100.0 32 ............................. CTCTTGTAACTCCTCGAGTTTATCGATGAATT 493421 29 100.0 32 ............................. AGATAATTTGAACAATTCAGTTTTCCCTAAAT 493482 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 493543 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAATAGTTTATAAACAATGATATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTATACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 510870-514011 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPH01000001.1 Salmonella enterica subsp. salamae serovar 53:lz28:z39 strain BCW_1521 NODE_1_length_1193104_cov_0.607004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 510870 29 100.0 32 ............................. CAATGCTGAAATTAGCTGACTGGCTGCACCGA 510931 29 100.0 32 ............................. GGTTCGTCGAAACCGCTTGTTATGACCGGCAT 510992 29 100.0 32 ............................. CGTCTGATCCTCGCTATCTGGATATGGCTGCG 511053 29 100.0 32 ............................. GATTGATGATATTTTTTTAAAGGCATTGCGGC 511114 29 100.0 32 ............................. GAATAACACAATTACTAACCTCACCTCCAAAA 511175 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGATAACGAC 511236 29 100.0 32 ............................. CCGTGATCACCGGCGTTGTTTGCTGGCGCATC 511297 29 100.0 32 ............................. AGGCGGCATCAGTGGCTCAGGATGCCGCAGCC 511358 29 100.0 32 ............................. CGCCCTATCACCAATCACCAGAACACATCCAG 511419 29 100.0 32 ............................. CGCATATTGGCTGTTGAGCATGAGCAGATCAT 511480 29 100.0 32 ............................. TTTATCCCAAAATATCCAAATATCTGGTGGTG 511541 29 100.0 32 ............................. GGGCGTAAACGAATGAGCGTTATTCAAAGAAA 511602 29 100.0 32 ............................. ATAGTTACGGTTTCGCCCTGTAATCCCCATAT 511663 29 100.0 32 ............................. ATGTTTCGGCAATAAATCCTGACGGGTGCAGC 511724 29 100.0 32 ............................. CTTTGACGGCACCACCCGTTTCAACGGGGAAA 511785 29 100.0 32 ............................. TTTTACCTACGAATACGTGTTTTCCCCGGAAA 511846 29 100.0 33 ............................. TAGCCTTGCCCTGAATCCACTACGGCGAGGCAT 511908 29 100.0 32 ............................. CGCTGCGAGGCAGTGACCATGTTTTCAGTGCC 511969 29 100.0 32 ............................. AAAAATACGGGCGCACAAATATTATTAATGTT 512030 29 100.0 32 ............................. GTGGCGGCGGCGTAACTTCAGTAAATGGAAAA 512091 29 100.0 33 ............................. AAATTAGAATACATTTCCATATAATCCTTATAC 512153 29 100.0 32 ............................. CGTATTTACGCTCTCGCTACCGATATGCACGG 512214 29 100.0 32 ............................. CAGGTTGATTAATTCAGGAAATTACAGCAAAG 512275 29 100.0 32 ............................. CGCCTGTAACAGCAGGCGCACACTTTGATACA 512336 29 100.0 32 ............................. CGTTCATTACTTACCCCTGTAAAATGTTTATG 512397 29 100.0 32 ............................. CGCCTTTTATATTTTGACCAAATACATTTAAT 512458 29 100.0 32 ............................. AATTAAATCAGTCAGCAATTGTCACTGGTCAG 512519 29 100.0 32 ............................. CAAAAAATTACCTCCGGTTGTCTATTGGTGGC 512580 29 100.0 32 ............................. ACACCCTGAATACTCGCTTAGCAAAAAGTAGT 512641 29 100.0 32 ............................. AAATTTTAAAATACCTTCCCCCACATCTTTTG 512702 29 100.0 32 ............................. GGAGTAGTATTATTTTATTGAAACGGGTGAGT 512763 29 100.0 32 ............................. CAGCGATGCGAATTCTTCAACGGTGCGGTCGT 512824 29 96.6 32 ............................C GCCGCAGTATATTCACTGTCCGGGTTGCGGGA 512885 29 100.0 32 ............................. AGATCGAGGCCGTTAGAACTATTGCGGGGAAG 512946 29 96.6 32 ............T................ TTATATGCGCGTTTCCTGCCTAATAAATGGAT 513007 29 100.0 32 ............................. AAATGCGCCGTAAAGGGCGTATGGCCGCATTG 513068 29 100.0 32 ............................. AATTCCGCTACATGCAGGACCACTACAGCGAT 513129 29 96.6 32 ............................A TTTCCAGCTCAATTCCAATACCAAGCGTACCG 513190 29 100.0 32 ............................. CCAGTATTCAGCCCCAGCCTATCAGCAGCCCA 513251 29 100.0 32 ............................. CCTGGGAAATACCTATCGCCAATGAGGGTGCA 513312 29 100.0 32 ............................. AGGGGATCGAGGCGGTAAACGCGGTGAACCTC 513373 29 100.0 32 ............................. ACGCAATAGAGGCCGTAGCGCTGGCGCTGCGT 513434 29 100.0 32 ............................. GGGCAGAGTTTATTCAGCGCGTACAGGAAATG 513495 29 100.0 32 ............................. GCGGCGTTTCGTGCAGCGATACAGATTAGCCC 513556 29 100.0 32 ............................. CAGAAATAATGAGAAATATCAATGCGTCAGGT 513617 29 100.0 32 ............................. GCGGCGTTTCGTACAGCGATACAGATTAGCCC 513678 29 100.0 32 ............................. GTGTACGAGACATTTCAAATGCTGGTTCGCCG 513739 29 100.0 32 ............................. ATTCTCGACCACTCTCCAGCAAGCGTTCGGCT 513800 29 100.0 32 ............................. CCTCGCATAAACGAGACTCGTTCTGGATCTGG 513861 29 100.0 32 ............................. TCTTAAACGGAGCTTTTATGACGTTTCAAAAA 513922 29 100.0 32 ............................. AATGTGACTGAACGCTGGAAGCTCAACGAACA 513983 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATCAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAAAGTATTTTAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 887426-888553 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPH01000001.1 Salmonella enterica subsp. salamae serovar 53:lz28:z39 strain BCW_1521 NODE_1_length_1193104_cov_0.607004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 887426 29 100.0 32 ............................. TTTTATATCGCACCGCCAGCGCCGGTAGTTGA 887487 29 100.0 32 ............................. ATTATTCACTATATTTTTTTTCCGACGCGGAG 887548 29 100.0 32 ............................. GCGGTTTTTGACAGCCCCAGCGACCGCCGTAA 887609 29 100.0 32 ............................. CCTAAAAAAATCATTGTCACTCAGTGAGCTGG 887670 29 100.0 32 ............................. TCACGTGCGGTTATCCTGCGATTTCTGACGAG 887731 29 100.0 32 ............................. TTCAACACCATGAATGGTGTGCTTTGTCGTCT 887792 29 100.0 33 ............................. TGACGCCCCTCAACGCTCACCGCAGCTCTACAC 887854 29 96.6 32 ............................T TAAGACCGTCGCCGAAGGCGTCACGGAGTATA 887915 29 100.0 32 ............................. AATTCCGCAACATGCAGGACCACTACAGCGAT 887976 29 100.0 32 ............................. AGATTGAGACCGTTAGAACTATTGCGGGGAAG 888037 29 100.0 32 ............................. TATATTTTGGCGGCCCTTGAATCGTTCGGGGC 888098 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 888159 29 100.0 32 ............................. GAATTGTTGTAATGGGAACTGGTTTAGCTATC 888220 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 888281 29 100.0 32 ............................. TTATTCTGAAATAACCCTGGCAGAAGTCGGGG 888342 29 100.0 32 ............................. GACGCATCACAATATGCATGGGATACGCTGTT 888403 29 100.0 32 ............................. CTCGCGCATTATCTTTTGATCCCATAGCGTAT 888464 29 100.0 32 ............................. GAGCCATTGAAATCAACGTCCCGGTAATTGTT 888525 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATACCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCCCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAGTTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTTTTTATAAACATAGGGATGGCACTAGA # Right flank : GGTCACGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGTAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //