Array 1 1817-3418 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCY01000038.1 Megamonas sp. Calf98-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1817 30 100.0 35 .............................. AAAAGCTACGAGATGGCTTATGATATGTATATTAA 1882 30 100.0 35 .............................. TTTACCGTATTCGTTAATGATAGAAGTTTGAGCCA 1947 30 100.0 36 .............................. GAAATCAGTAAATCTATTCATTAAATCACGAATAAA 2013 30 100.0 36 .............................. TGCTTGATGAAATGCAAAAAGACGTTAAAAGAGAGC 2079 30 100.0 35 .............................. AGTGAATTTACAATATCTGAAATTATAAATAATGT 2144 30 100.0 35 .............................. AAAGCTTTAGCTAAGTATGATTTAATGACTAAAGA 2209 30 100.0 35 .............................. TCAGACTTTTTATCTTCTAGAGATATGCCTTTTGA 2274 30 100.0 37 .............................. CTGCTGCTAAAGAAAAACTTCAAAGATTTTTAGATGA 2341 30 100.0 37 .............................. AGTATATTCTTGATTGATTGTTATTATTTCGTCCATA 2408 30 100.0 35 .............................. GTTACAATAAATAATGTTGCTCATGCCACTAAGGC 2473 30 100.0 36 .............................. ACTAACATTATCACGCTTTTTTAATTCATCAAAAAT 2539 30 100.0 36 .............................. AATAAATACCGCCATATAACTATCATCTAAAACTGA 2605 30 100.0 36 .............................. TTTATATTGGATTAATGCGAATTATGTATTTAGAGG 2671 30 100.0 36 .............................. TATTCACATAAAAAAATCAAAGCAGATATAAAAGAA 2737 30 100.0 36 .............................. CAATATGTTGTTCCATCTCCATTAGTAGATAAAATT 2803 30 100.0 36 .............................. AGTAGCATCAAAACAGCCTAAAAAACATAAAGCAAT 2869 30 100.0 35 .............................. TTTGTTGTTATAGGTTTATTAAATCAATATCCAAT 2934 30 100.0 36 .............................. ATTTATACTGGTTCCTTTTGTTATTAAAAGTTTTCT 3000 30 100.0 36 .............................. AGATATTGCATCTAATGCTAGTATGGAGCTTTATTA 3066 30 100.0 36 .............................. AACAGAAACTTATTTAGGAGGTGATTATATGTATAT 3132 30 100.0 34 .............................. TTGATTTTTTTATTTTGTTCACATATAATCGAGA 3196 30 100.0 34 .............................. TAAAAGGGGCTGTTTTAGAGAAATATTACAAAAT 3260 30 100.0 34 .............................. CCTTTGCAGGTTTGCAAGTATATCAGGTACATTA 3324 30 100.0 35 .............................. TATTTTAAAGTAAAGGCACGTTTCACTTTACACCT 3389 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : TCTTCTTGGATATCAGTCAAGAGCCCATAATGATATTGACATTTTTGTAGAAAAGAACGATTATCAGAACTTTATAGAAATAATGAAAGCTAATGGCTTTTATGAGATTAAGATGGAATATACAACATTGAACCATACTGTATGGGAAGATTTGAAAAACAGAATTATTGATTTGCATTGTTTTGAATATACGGACGAAGGTGAAATTCTTTATGATGGGGATTGTTTTCCGGTAGAAACTTTTTCGGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGGAGTTCTGATACTCCCCTATAAAAATGGCTATTTATCAACTGTTTGTTGTGACATAGCCATTTTTTAATAATAAG # Right flank : TGCTAGAAAAATCAATCTTTATGATTTTCATTATACTATTAAAAGTATTGATACACAAGGATTTTAGTTGTTTTTTACCAGCGATAATAGGATTTTTGGAGATTTTATAAAAAGGTTTAATTTTCAAGCTTTAGAGGAGTTTTGTTTATTTTTAGCTGGTAATTTTATGGTAAATAAAATTTTATTAAGCAAAAAACAAAAAGCAACTATCATTGATAGTTGCTTTAATTTTATAAATCATATGGTGACCCACCCGGGACTCGAACCCGGAACCTGCTGATTAAGAGGTTTTATTTTTAATTTTTTTCATAATAATATGATAATATATTTTCTAAAAAGCCTATGACTATAGGCTTTTTTATTTTTTTCAAAGAATAATATAACTTCTTAAAATCTCATATTTTTATATATTGACAACAAAAATGACAACAATTATTTTTCATATATTTCTTTTAATTTTTGTATCTTTTCATTTGTAGATAAATTTAACCAAGCGGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 19332-18909 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCY01000009.1 Megamonas sp. Calf98-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 19331 30 100.0 35 .............................. TATTTTTCAGGATCGTGTTCATCAAACGTTAGCAT 19266 30 100.0 36 .............................. CAGATAAAAAACCGCTCGAAGATAAAATTGAAAAAC 19200 30 100.0 36 .............................. TTTAATTTAGATGACTGTTTGACATTTTATAGATGT 19134 30 100.0 36 .............................. TTCTTTCCTTTATTAAATGCCTTATCTATGTCTTGC 19068 30 90.0 36 ...............AA......T...... CAAATATCATTTCCATTTGTGGATTGATAAGCAATA 19002 30 90.0 34 ...............A.TT........... TGATAGCGTAACTGCTTCAATGGTGTCTTACCTA 18938 30 80.0 0 ...............A.A.....TA..G.A | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.3 36 GATAAATATCAACAGGTGCTGTACGAATAC # Left flank : CAACTCTAATTAAGGCTTTAAAAGATATGTAAAAATTATATAAGCGTTCATTAGAGTGAGTCTATTTTATAGATATTACAAAAGCTAGTAATCTTATAAAATGGTCATGAGGAATATTATAAAAATAGGTGATTTTGTAATAACTAAGAATATCGCCAAAGATGATGACTATTTCTGTAAAATAAAAAAAGCTGGTGCAGTCATTTAAAACTACATCAGCTTTTAAGATAATGAGATTATTTATAGTATATATCGTATCATTTTAACTTTGGTATCAATCAATGAAAAATTTAAATTAATGGTGGATCAATATTACTATGTTAATTGATGATGCACATATTTTACCAGCTAAATTTTTATAAAATCTTAATAACTACTGTGATTACTAGCTTTATAGATTTATAACCAATATTTGCTATTTGCTGGTAAATCTTTTTAAAGTCTTGCAATATTAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGG # Right flank : AATTGAATATGTATTATTTGAGTATGGCGGTTATTAATAAAAATACCGCCATATTTTGATATATAACTATTAGTCAAAACTAATTGATATCTTGTTATATTCATATATGGCGGTTAAAATTAACGTACTAAAAACGTACTATTATAAAAAGAATAGAAAAAAATATAAATATTTAAATATAAAATAGCCTATATTATATAGGAAGGAAAAAGATAAAAATAAGGTGAAATTTGATTAAAAATATACGCTGAATAATTAAGAAATAAAGTCCGTATTCTAAAAAGAATACGGCTTTTTTTTATCATTAATGTCAACTGAAATTTTGTATAGGTTGACCAATTGATTTAGCTTAAATATAATATTAAGGGATTAAAAAATAAAACTTAAGTGTAAAAGGTTGAAAGATAATGATAAAGCTTATTCAAAAGTTAGCAGATTGCGATAATTCTTTTTTTGGCGGGTGGTTATTAGCCAGAGCAGAGATACATATTCGAAAAGAC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGGTGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 6872-7229 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCY01000034.1 Megamonas sp. Calf98-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6872 30 100.0 35 .............................. CCAAGATATATACGTTTACCATTAATGTTTATATA 6937 30 100.0 34 .............................. TTGATGAAAGTGTTACAATTCATTTAGATATAGA 7001 30 100.0 36 .............................. ATTTTATTTCCTAATGCATTAATGCCAGCATTAGTA 7067 30 100.0 36 .............................. TAGTTATTTAGTATAGTATTTACAATTTCTATATTT 7133 30 100.0 36 .............................. TCTGGACTTAATCTTAGCGTTCTAAAGTCGATGTTT 7199 30 80.0 0 ...............TT...A.T...A..A | A [7218] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.7 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAAATACTCATTATAATTCTTTAGATTTATTTTTCATATCACCCAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATCACCATTATTGCTGGTAAAAAATATCAATATCCTTGTATATCAATGCTTTTAATAGTATAATAAAAATCACAAATACTGATTTTTCTATC # Right flank : ATAACTTTTCCACTATTTGATAAATATGTAGATAACTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTACTTTATTCTTTATTAGCTATACCCAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGACCCATACCTTTTAATTGTACAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCAACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATAGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCAATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 38686-39241 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCY01000004.1 Megamonas sp. Calf98-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38686 30 100.0 35 .............................. TATTTTTCAGGATCGTGTTCATCAAACGTTAGCAT 38751 30 100.0 36 .............................. AGATGTTATTAAAGCTTATAAAAAAGAAATTGAGTT 38817 30 100.0 36 .............................. AGATATGGTTTTACTTTATCTGCTGTAGCTGTTTCA 38883 30 100.0 37 .............................. TCGTATTCGGCAAAATGATAAAAATTATCTCATACGT 38950 30 100.0 34 .............................. GCTATTTTCCCTTTTTGTCTAAGTTCACCATTAA 39014 30 100.0 36 .............................. ATGTTAAGATGCCTCATTTTGAAGCATCCTTTTGCG 39080 30 100.0 36 .............................. CGACCTGAAGGATAAAATTATTTACGCTTCGGTCTA 39146 30 100.0 36 .............................. AGATTAGAAGTCTTAGCATATTGATAGCATTTTTAT 39212 30 93.3 0 .................A........T... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : CAATAGATATCAATACAAGAAAACCATTACTTGGCAATATTACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGTGCTGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTCGCAGTAGGAGCACATAACTTCATTGACCCATCAGCATTAAAAGTAATTGCAGATGGTATCTCTGAATATATGCAAAAACATAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAGTCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTTATATAACTAATAAAAATCAAAATCAGCCGGTAAAATTTTTTTATATCCTTGAATAACAAGATTTTAGAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : TGAATTAGGAGAGATAAATAGTTGTGGAAAATGTAAAAGATATAAAGAAAGTTATTATTGATATATGTTATCAGGAGGGAATTACAAGAAGGGATTTAATAGCGGTATACAATAAAAAATATAATAAAAATTTATTGGAACAAACTTTTACAAAAACATTATCAAATAATAATATAAAATTTAACATGTTGGTAGACTTGTTAGATTCTATAGGTTATACAATAGATATTAGAAAAAAATTATAAAGAGATTTGTATTTATAAAAAAACTTATTGACAGTATATAAAGTTTGTGATATATTAACATATGTTGTATCTGAGATGCAACGTATTGCACAAGAAGAAGTCACCGCTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //