Array 1 39828-39372 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIVX01000012.1 Escherichia coli strain AF94 contig_0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39827 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39766 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39705 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39644 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 39583 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 39522 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39461 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39400 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66959-65527 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIVX01000012.1 Escherichia coli strain AF94 contig_0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66958 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 66897 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 66836 29 100.0 32 ............................. GCTTGCGAATGTGTGCCGTAGAACGTGCGTCG 66775 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 66714 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 66653 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 66592 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 66531 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 66470 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 66409 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 66348 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 66287 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 66226 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 66165 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 66104 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 66043 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 65982 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 65921 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 65860 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 65799 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 65738 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 65677 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 65616 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 65555 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //