Array 1 5363-6000 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTJ02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0305 NODE_4_length_188399_cov_18.989552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5363 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 5424 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 5485 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 5546 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 5607 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 5668 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 5729 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 5790 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 5851 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 5912 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 5973 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22641-24135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTJ02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0305 NODE_4_length_188399_cov_18.989552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22641 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 22702 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 22764 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 22825 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 22886 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 22947 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 23008 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 23069 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 23130 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 23191 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 23252 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 23313 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 23374 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 23435 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 23496 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 23557 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 23618 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 23679 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 23740 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 23801 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 23862 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 23923 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 23984 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24045 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24106 29 93.1 0 A...........T................ | A [24132] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //