Array 1 987-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKNE010000388.1 Proteus mirabilis strain 2020EL-00078 NODE_388_length_1030_cov_46.698782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 986 29 100.0 32 ............................. AAATAGAACGTATCGCAGCTGTTATTTCTGTT 925 29 100.0 32 ............................. TTGATTACGTTTCTCTCAGCAAAACAGAAAAA 864 29 100.0 32 ............................. CGTTAATGACTTTAGATGTTTATAACCGTTTA 803 29 100.0 32 ............................. TTTTACAATGTTTTATTAAATGGTGTTCGACT 742 29 100.0 32 ............................. GTGTAAACCGCATCTTGTTCAGGGATTTCTTT 681 29 100.0 32 ............................. AATGCGCAGACGACCTTTTAAGGCTTGGTTAT 620 29 100.0 32 ............................. GGGAACCGTTCCGCTTTGCCATCTTATTTGCA 559 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG 498 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG 437 29 100.0 32 ............................. GTGAAATGATTGTTCGCAATGATATCCGAGGC 376 29 100.0 32 ............................. CATCTTCAAAGACTTTCTGACTGTATGGCTGA 315 29 100.0 32 ............................. CGAACGTGATGACCAAACACATGTACACACCA 254 29 100.0 32 ............................. AATGGGCTGAGGACGAGGCAATGAACAATGAG 193 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : GTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAG # Right flank : GATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14775-14502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKNE010000065.1 Proteus mirabilis strain 2020EL-00078 NODE_65_length_19280_cov_38.258184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14774 29 93.1 31 ...........................GA CCGCCACCTATCGCAGCGCCCCATGGACCAC 14714 29 100.0 32 ............................. TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 14653 29 96.6 33 ....................G........ AGGGTCTGGTACCAAAATGATCCGCAACTACGC 14591 29 100.0 32 ............................. AGACTGCAGACGCGCACCGGTAGCAGTTTCTA 14530 29 82.8 0 ....................G..A..TTA | ========== ====== ====== ====== ============================= ================================= ================== 5 29 94.5 32 GTGTTCCCCGTGTATACGGGAATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGAATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //