Array 1 20332-17984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBW010000150.1 Salmonella enterica isolate 1076_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20331 29 96.6 32 .........................G... GGCGCTACAGTCTGAATGATCTCCACGCCTCC 20270 29 96.6 32 .........................G... TTTCCTGTAACATTCCGATATATAATTCTCCG 20209 29 96.6 32 .........................G... ATGACGACCTGATTTCAATTGACGCGCTGACT 20148 29 96.6 32 .........................G... TCGCGTGAGGACATTGCCCCTGACACCGGGCG 20087 29 96.6 32 .........................G... GGATCTACGGCTTTAAAATCGTGTTTGCCTCG 20026 29 96.6 32 .........................G... GCGATCTGCTGGTGCTGGGGGGTAATCAGTCC 19965 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 19904 29 100.0 32 ............................. GGGAACAACACATCACCCCTCACCGAGGGCGG 19843 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 19782 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 19721 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 19660 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 19599 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 19538 29 100.0 32 ............................. GAGCACTCAGAAATTTGGCAACTGGACGCTGA 19477 29 100.0 32 ............................. GCTGAGGGTTCGGACGGCATAGGAATAGAGCA 19416 29 100.0 32 ............................. ACTCCAGCCCCACACGCGCTGGCCGCGCTAGT 19355 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 19294 29 100.0 32 ............................. TTGGTGCCGCTCCAAGATTCACCGCGTTTATC 19233 29 100.0 32 ............................. ACGTTTTCCCACAATGAAATCGCGTTCGTAGT 19172 29 96.6 32 .............T............... GAGATCCGTTTGCCGCACTGGAGGCGGCGTTA 19111 29 96.6 32 .............T............... GCCCGCAATCGGATGCTGTCACGTGAGCGTGA 19050 29 96.6 32 .............T............... AGCCTGGGACTATCAGTTATGACCACGAAACC 18989 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 18928 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 18867 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 18806 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 18745 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 18684 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 18623 29 100.0 32 ............................. GCACAATTACAGTTTGACGCGGTGCTGTCATT 18562 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 18501 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 18440 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 18379 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 18318 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 18257 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18196 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18135 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 18074 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18013 29 96.6 0 A............................ | A [17986] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTGCCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGTTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38764-36601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBW010000150.1 Salmonella enterica isolate 1076_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38763 29 100.0 32 ............................. CTCGACACGCTGAATAAAACTAAATCAATGTG 38702 29 100.0 32 ............................. TCGTCACTAGTACGTGACCATATAGGCCGGAT 38641 29 100.0 32 ............................. AGTATTTACCCAGCGTGCAATCATGTTGAGGT 38580 29 100.0 32 ............................. AGATCGGCAGTGTCATAACAGCCCGCCACTTC 38519 29 100.0 32 ............................. ATCTTATTGTGAATCATCTGCCCTATGCCAGA 38458 29 100.0 32 ............................. CTGGGAGATAGCCAAAAAACTGGGTAACGGCA 38397 29 100.0 32 ............................. ACATTGACCTGTTGACCCGTAACGGAATCGAC 38336 29 100.0 32 ............................. CCGTTACGGTTGATACGCGCCAGGTCACTGTT 38275 29 100.0 32 ............................. CCGTGTGCGGTCTGTGCGCCGCCGTTGTTAAC 38214 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATCGAT 38153 29 100.0 32 ............................. GTGGCTGGTTTCCGATTATTCGCGAGTCATAC 38092 29 100.0 32 ............................. GCTCTTGCGCGAGGTGTGCGCTCAGAGGCCCT 38031 29 100.0 32 ............................. ATACGGAATCTTATTTTTCTGTGTTATTTCAA 37970 29 100.0 32 ............................. CTGGCAATAAGCCGCACTTTTGATAACGACGT 37909 29 100.0 32 ............................. TTCAGGGAGGATTTACAGGCCCGGTCCCCACC 37848 29 100.0 32 ............................. TTCGTTGTTAATCCAGTCCTGCGCCTTGCGGT 37787 29 100.0 32 ............................. GCAGAAATTCGATATTTGCAACAGGTCGGCAG 37726 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 37665 29 100.0 32 ............................. GGGCATTAACCTGTTGTTTTTATTACTGGTAA 37604 29 100.0 32 ............................. GTGAATCTGCTGGCGCAGATCAACCGGCAACG 37543 29 100.0 32 ............................. ACATGACGCGTGAGGTGCCGTTCCTGGTTGAA 37482 29 100.0 32 ............................. ACCGGACGACAAAAACCGAAAATGACAAACAC 37421 29 100.0 32 ............................. GAACGTTATCCGCAACAGCAGCCGCCACGTCA 37360 29 100.0 32 ............................. GCAAATTTCGACAGTGAGCAGGCTATTTCAGC 37299 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAAGC 37238 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 37177 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 37116 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 37055 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 36994 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 36933 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 36872 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 36811 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 36750 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 36689 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACT 36628 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGAGCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //