Array 1 633-1724 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FZYE01000036.1 Neisseria meningitidis strain Neisseria meningitidis isolate R062, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       633	    36	  97.2	    30	........G...........................	GTTTCTTCCCATATACTGCTGTTCAAACCG	
       699	    36	 100.0	    30	....................................	CTTCCGTGAGATACATTTCCCAATCTTCTT	
       765	    36	 100.0	    30	....................................	TGATTTGCTCGACAGGTGAATAGCCATAAA	
       831	    36	 100.0	    30	....................................	AATTTAATACGGCGACCATCTCGTGCCAAG	
       897	    36	 100.0	    30	....................................	TCATCAATCGCCCACTCAAACCCAAGCATA	
       963	    36	 100.0	    30	....................................	CCGCAAAGCAGCCGAAAAAGCCGACAGGAA	
      1029	    36	 100.0	    30	....................................	TGACAAATAAAGCACGATTGTTGCAAAAGG	
      1095	    36	 100.0	    30	....................................	CCAACGGATAAAATTACGCCCAAGCACCTG	
      1161	    36	 100.0	    30	....................................	GTATTGAGCGTCAAGTACTCGCCATTCGAG	
      1227	    36	 100.0	    30	....................................	TGAAGGTTCGATAATTCGACCTGAAAAACG	
      1293	    36	 100.0	    30	....................................	TCACTCTAAAAATCCGATTCTACCACCGCT	
      1359	    36	 100.0	    30	....................................	TTGGCTCGTCTGCTGCCGTCAATCGTGCGC	
      1425	    36	 100.0	    30	....................................	TAGATTGCCTCATATACGCCGAGCGGGTAG	
      1491	    36	 100.0	    30	....................................	CAGGTCGTGCTGGAGCAGGCCGACGATTTT	
      1557	    36	 100.0	    30	....................................	CATACAGTTCATCTTCACCTGCAATCAGGG	
      1623	    36	 100.0	    30	....................................	TCTGCGGATTCGTACAAGTCATAAACTTTT	
      1689	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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