Array 1 274185-276009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJS010000001.1 Phocaeicola dorei strain DFI.7.13 POCNIELP_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 274185 47 78.7 29 ...A............................AC.AT.G.A..CA.C GATTTAAAACCTTAACACCACCAATCATA 274261 46 97.9 31 ................................-.............. CCATCTATTAGTACAATGGCGGTAGTTATAA 274338 46 97.9 31 ................................-.............. CTATGAACCCGATCTGGGGGATTCTTGGGTA 274415 46 97.9 30 ................................-.............. CCGCTTCATTGTGGGGAGTTTACTTTAATA 274491 46 97.9 31 ................................-.............. CAATAGAGTTTACAATTACGAGAATGAAGTA 274568 46 97.9 31 ................................-.............. CTCCATTCTTTTATAAATTCAAGTTTGTACC 274645 46 97.9 31 ................................-.............. CTCTTCTCATATTCTATACCTTTCTTAATGA 274722 46 97.9 30 ................................-.............. CTACGAGTACCAATAATATTACCAACACCT 274798 46 97.9 31 ................................-.............. CCCATAGATGCAAGAGAACGACCAATGTCAG 274875 46 97.9 30 ................................-.............. CTCCCCATTTCCAGTGGGGCGAATGTCTTG 274951 47 100.0 31 ............................................... CCTTCTAATGCAGGTAAGGCTGCCATTACTA 275029 47 100.0 31 ............................................... CTGTGAAGGGTACATACCGCTTTCGAAAAGA 275107 47 100.0 31 ............................................... CGCTGAGGACGAACTTTGAATGTACGATACG 275185 47 100.0 31 ............................................... CAATGGTTTTATGCACATTTCCTTTGGTTCT 275263 47 100.0 31 ............................................... CTAAAAGGAGACAAATTATCACCGATGAGAG 275341 47 100.0 31 ............................................... CCTATCCAAGGCTAAGCATAAAACTACTAAA 275419 47 100.0 31 ............................................... CCTTATGCGTATAATGTAGATTATTGGGATG 275497 47 100.0 31 ............................................... CAAAAAGCCAAGAGAAGCCCTGGATCTCGGT 275575 47 100.0 30 ............................................... CTGTTTATATCGCTAACGGGTATGCTGATG 275652 47 100.0 30 ............................................... CATTATGCCACGCACTTCCAATTTGATAGC 275729 47 100.0 31 ............................................... CCCATCGTTGTGAAGAAAAAACGTATCGGTT 275807 47 100.0 31 ............................................... CGATAGACCGTTCCTTTTTATCGGAAGAACT 275885 47 100.0 31 ............................................... CCACTTCTTGCTATATATACACATGCCGCAT 275963 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 24 47 98.3 31 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATACCATTGGAAACAA # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTAGGGACAGTCGTTTAATTCCGTCATTATGAGTCAATCGGCAGACTGTCCCGGTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATACCATTGGAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 83971-83474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJS010000023.1 Phocaeicola dorei strain DFI.7.13 POCNIELP_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 83970 33 100.0 33 ................................. TTGTAAGTTGCTTGATATGCTTGGCTATGGTTC 83904 33 97.0 33 T................................ GAACATTGTTGGTTTGTTACGCTAACCTATGAT 83838 33 100.0 31 ................................. CTCTATTATCATTTTTTTTAAGGTTAGGAAA 83774 33 100.0 34 ................................. GCCATGATATTTACTATATTTGTTTCTTCCTGGC 83707 33 100.0 33 ................................. ACCCACATGTGATTGTTTTCAAAACCATAGTCA 83641 33 100.0 34 ................................. CTCCAGTACCATGTTATGTACCTAAGGTATAGGA 83574 33 97.0 33 T................................ ATCAATGGCCCAGTATTCGGCAATATCGAAGAT 83508 33 81.8 0 G..........G.......A.A.......G.G. | AA [83489] ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.0 33 AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Left flank : GATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAG # Right flank : ATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Alternate repeat : TGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.80,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //