Array 1 32-926 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVI01000023.1 Veillonella sp. 3960 contig_0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 .................................... ACAATAAGAAGAAAGAAATCAACGATACTA 98 36 100.0 30 .................................... GATGTTAGAGGAAAACACGAGACGAACCGC 164 36 97.2 30 ....................A............... ATAATGACCTAGTAGAAGGTAAGAAAAAAC 230 36 97.2 31 ....................A............... TTGATTTGGATACATTAGTTATGCCAAATGA 297 36 100.0 30 .................................... ATATGATTGTGCATACACTTGTTATGGAAA 363 36 100.0 30 .................................... AGAAGGTAGTTTTACATACCCCTAATGATG 429 36 97.2 30 ....................T............... CAGGTTATACTCTCAAACCTCCTACCCCAG 495 36 97.2 30 ....................T............... AGAACGTCCTAACTTGCCGTGAGGATGTTG 561 36 94.4 30 ....................TA.............. TCTGCCACTATCACCCAATCTGCGTGACAG 627 36 91.7 30 ....................T...T....T...... ATACTGATCCATCCGCCCTACGGTACGTTG 693 36 94.4 30 ....................T..........T.... TTCGGAGAGGCTTTTGGGGGGTTAATTATC 759 36 94.4 30 ....................T.......G....... AGGTCAAAATTCGCTATTTTTTTAGGTAAT 825 36 91.7 30 .................C..T..G............ AACATAATGCAGTGGATCCGAACACTTTGG 891 36 72.2 0 ......A......A......TAA.T..AT....T.T | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 94.8 30 GTTTGAGAGTAGTGTGATTCCGTAAATGACTCAAAC # Left flank : CTGTCATAGTTTAATAATGTTAGTTAGATTAG # Right flank : TGAGATAATTACCAAGTATATTAAGATATTTGAACTTAATTGTTTTATAATTTTATCATTTAAACGAAGGAGGCCCTCCATGGCTAAATACGAATGGTGTACTGATGAATACCTAGAAAAGAAAAAAGAATGTTTTGATGCTTGTTTAAGTAAAGAATTTTTACAAGACTTGCAGGAATTGGTGCGTGAACATTATGATTTCGATGATGACTATCGCATTGGTAACTGGGACTTTATGGATGAAGATACTGTGGGTGTATACCGATTTGTCGAGACTTTAGCTGAAAAACATGGTGTTCAGGAACTGATTACCTTTTTAGACTCATTGGATTGGTGTGAGTATGATCTTGCAATGGATACCATGTTTGTTACCTATGGTAGAATGTTTCATTTGTTTACGCCAAAACGGCGCTATAGAAATCTATTTAAAGCAAAAGCTTTACATTATAAAGCTTGGATGCGAGAATTGAGGAAAAAATAAAATGATTTACTTTACCAGC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTGATTCCGTAAATGACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 11-305 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVI01000067.1 Veillonella sp. 3960 contig_0067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 11 31 100.0 35 ............................... AAATCTAGATAATTTTTTCATAATATATTTTTTTT 77 31 100.0 35 ............................... CAAACAAAAGATTTCATACTCCACCACATTAGATG 143 31 100.0 35 ............................... CAAACTAAAGAACAGTACAAAATAAGAAAAGCAGC 209 31 100.0 35 ............................... CAAACGAATCTAAATGATCTCTATACATCTTTACT 275 31 96.8 0 ...................A........... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 GTTTGAGAGTAGTGTGATTCCGTAAATGACT # Left flank : AATCTTTTTTG # Right flank : CAAACAAAAATATAATTAATATATTAATAAGTAATGTTTGAGATTAATATTATT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTGATTCCGTAAATGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //