Array 1 912-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBK01000020.1 Listeria monocytogenes strain ICDC_LM1204 LM1204Scaffold20_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 911 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 844 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 778 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 712 36 100.0 30 .................................... TAGGTTCGTGTGGGTAATCCCGGCTTGCGA 646 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 580 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 514 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 448 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 382 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 316 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 250 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 184 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 118 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 52 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : CCAAGTCGGTATTTC # Right flank : CACTTACTGAACAACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 235-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBK01000004.1 Listeria monocytogenes strain ICDC_LM1204 LM1204Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 234 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 168 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 102 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : C # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6364-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBK01000014.1 Listeria monocytogenes strain ICDC_LM1204 LM1204Scaffold14_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6363 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6297 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6231 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6165 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6099 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6033 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5967 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5901 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5835 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5769 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5703 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5637 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5571 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5505 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5439 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5404,5407,5412] ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //