Array 1 42886-43829 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJZ01000009.1 Escherichia coli strain EC_100 NODE_9_length_198243_cov_22.325051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42886 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 42947 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43008 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43069 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43130 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43191 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43252 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43313 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43374 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43435 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 43496 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43557 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43618 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43679 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43740 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43801 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69529-71387 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJZ01000009.1 Escherichia coli strain EC_100 NODE_9_length_198243_cov_22.325051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69529 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 69590 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 69651 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 69712 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 69773 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 69834 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 69895 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 69956 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 70017 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 70078 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 70139 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 70200 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 70261 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 70322 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 70383 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 70444 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 70505 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 70566 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 70627 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 70688 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 70749 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 70810 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 70871 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 70932 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 70993 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 71054 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 71115 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 71176 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 71237 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 71298 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 71359 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //