Array 1 129672-132688 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMWT01000025.1 Bifidobacterium parmae strain Uis4E Contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129672 29 100.0 32 ............................. CGGGATTTCCGCAAATGGGCCACGCAGGGACG 129733 29 100.0 32 ............................. TCGACTAAGAAAGGAATGGACATGGCCGAGGA 129794 29 100.0 32 ............................. TGACGTGTGAGATTGATTGCGTTATCTGCCTG 129855 29 100.0 32 ............................. GGCCCTCCCTGGGCGCGCACATGTGGGAAAGG 129916 29 100.0 32 ............................. GTCGCGGTCTTGCCCGCTGCGACGGTGAGGGT 129977 29 100.0 32 ............................. CTCGTCACGGCCATCATCCCGCCCCTGACCTC 130038 29 100.0 32 ............................. CAGGCCATCACCGACATGTCGGACAACGCCAA 130099 29 100.0 32 ............................. TCCAATCCGACCTGACCGTCACCGCGCACATC 130160 29 100.0 32 ............................. ACCGCGACGCACGCTCCCGACGAACGCCTTGA 130221 29 100.0 32 ............................. GCGCCGGCGACGACGCCGACGGCGCCGACTAT 130282 29 100.0 32 ............................. GTGTTGCGGTACCCCTTGCGTGTCTCCGCCTT 130343 29 100.0 32 ............................. CATGGCCACGCTCTTGAAAGTTTCGGCGTTGC 130404 29 100.0 32 ............................. ATGCGATGCAGCAAGTCCAGTTGCGACGGGTA 130465 29 100.0 32 ............................. GTGTCGGCGTTGCCGCCGGCGACCGCGTTCAG 130526 29 100.0 32 ............................. CAAGTCAGATAATGCGGCGACCCACACCACCC 130587 29 100.0 32 ............................. CAGCTCCAGGCCGCGGACTTCTTCAACCTGGA 130648 29 100.0 32 ............................. GTGACGGATTCACGCCGGGCCTGTTCCCTCTC 130709 29 100.0 32 ............................. ATGCAACATATGTGCGCACTTGCTGACATATG 130770 29 100.0 32 ............................. GTGGCGCGGCGCGCCTCTTCGGGATACGTGAC 130831 29 100.0 32 ............................. GTGACGTTTACGACGGTGCTACCTATGCCGGC 130892 29 100.0 32 ............................. GGTGACGCAACAAGGTGACGCAACAGGGTGAC 130953 29 100.0 32 ............................. CTCTCCTGCACCCTTAAAGCCCGCCCGGCAGT 131014 29 100.0 32 ............................. AGTCGTTAGCTAGATTTCGACTCTCTCTGGGG 131075 29 100.0 32 ............................. GGCCAAGGATATTGGGACCGTCGAATCACGGC 131136 29 96.6 32 ...........................T. CGACACACCTATATATAAGGAGTAATCGATAT 131197 29 100.0 32 ............................. GAAGTCAAATACCGCGACGAATTGCAGGAGAT 131258 29 100.0 32 ............................. AGTTCGCGGGTCTCGTCCGGCAGTTCCGGCGC 131319 29 100.0 32 ............................. GCGCGTCATCGCCCGTCGTTCCTACCGCCGCA 131380 29 100.0 32 ............................. TTGCAAGCTACGCGTGTCGCCGCGAGGTCACG 131441 29 100.0 32 ............................. CGTTCCACCACTTCGGCCACGACCGTCGTCGA 131502 29 100.0 32 ............................. TGTCGTTGATGCCGCAGAACACCATGCGGTGA 131563 29 100.0 32 ............................. GGCATGACCACCGGCACGCCAGCCGCCGCCGA 131624 29 100.0 32 ............................. GGCATGACCACCGGCACGCCAGCCGCCGCCGA 131685 29 100.0 32 ............................. GCGATCCTTTCATGGCAGGCGCTCTTGGAGGA 131746 29 100.0 32 ............................. CGTCACCGTATGGGCGAGCGTCGCCGCCGTTC 131807 29 100.0 32 ............................. GCCGTGGTCTCACCCCAGCGCAGACCGCACAG 131868 29 100.0 32 ............................. TGTTCACCCAGCCCAAGCGTCGCGGGGCTCCG 131929 29 100.0 32 ............................. GGCTGACGGCCGACATCGCCGGCGAATACGAG 131990 29 100.0 32 ............................. ACACCCTCTCGCCATGCGGCAGTAGGGAAGGG 132051 29 100.0 32 ............................. ACTGACTACGCCTTCCTGTTCAACTCGCTCAC 132112 29 100.0 32 ............................. GCCTACCGGCGCGCGCTGCAGGCCGAGGAGCG 132173 29 96.6 32 ..........................T.. GGTTACGATTGGTGCCCCGCGCACGCCCCGTG 132234 29 100.0 32 ............................. GGTGCCGCAGCGTGTGTGGAGTCCAGCCGTCA 132295 29 100.0 31 ............................. CCCATACCGGCACCTCCTCGCCGCCCTGCCC 132355 29 100.0 32 ............................. TCGCCGAACTCGGCAAATGGGTGCAGGACAAC 132416 29 100.0 32 ............................. GATGTTGCGCGCGGCAGCGGCTCGCGTGCCAA 132477 29 100.0 32 ............................. CGGCGGCCGACTGTCTGGACGTGCCGGCGGAC 132538 29 96.6 32 ............................T AAATATGTCGATATCGATCAGTCGAAGAGGGG 132599 29 96.6 32 ......T...................... ACGTCGTAGGTGAGCGTGTCCTGCTGGCCGCT 132660 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 50 29 99.7 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : ACGACCATCGTCGACCAGCTGCCCGTCGAACTCGACAAGCGCGGCAACATCGCCCGCAACGACAAGTTCGCCACCTCGCAGGACGGCGTGTTCGTGTGCGGCGACGCCGGCCGAGGCCAGAGCCTCGTCGTGTGGGCCATCGCCGAAGGCCGCTCCTGCGCGGCCGCCGTCGACGAGTACCTGTCCAGCGAGCACGCCAGCGAGCTGCCGGCGCCAATCAAGGCGAGCACGCGTCCGATGATGCTGCCCCGCTGATTCTCGGTAGACGGAGCGGGGTGGTTCCTCCCTGCTCCGCCGGAGATATCCGGTTCCGTTGATTCGTATCGCCTCCTACGTCTGCATTGCAGATGTGGGAGGTTTTCGTATTCCGGACCCGTATCCATGAGCCGTATCTATACGGCGTAGAAAGGGCTCTCCGCTTAGCCGGTCGTCGCGTCGAAACTCAATGAAAATGCAACGCATCGTGTACTATATCGTTGGGAACGTAGGGATTTCGAAGT # Right flank : CGGCGCGGCCTGCTCTGAGCGGGCAGCAGGTGCTCTCCGTGTATGCGATGTGATGATGCGACGGCTCTAACTGAGCATGCCTACCGTCGGCGTGCTTGGGATGATACCAAATATGCGAAGAATGGCAGCCTTTCATACGGCAAATGTCACGCCCAACGGGTCGATGCCATGCACATACACGACATCGTCCACTCACCGCTCATCATGTGTGTGCAGGGAATGGAATCGTCTCCTTTGCGGCTGGAACGGTGGCGGCACTTATCTGCGCGGCTACGGATGTCGGTTCCCAGTTCATCGAATTCCCGATGCTCGGATGCCAGATGGCACCAAAGATGTGGGGATCGTCATGCTGAGCGCTCTCGCGAACCGGAAACGCATCGAAGACATGCTTGTTGTCGGGAGAACACAGAGACTCCGTCATTGGTACCATTGACGGCATCGAGATAAAGAGTCGGGTTCGCCAAAGCTGGGAAAAGGCCGGCCCGCGTCACCACCATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //