Array 1 33669-36950 **** Predicted by CRISPRDetect 2.4 *** >NC_013357.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 33669 33 97.0 33 A................................ AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGG 33735 33 100.0 34 ................................. CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCA 33802 33 100.0 33 ................................. AAAACTCCGCCTTTGGTGATATCTGAAACATCA 33868 33 97.0 34 T................................ ATTGAAATATCCATTGCCACCAAAGGAAACAAGC 33935 33 97.0 32 G................................ CATACAGACTGAATACCGCAGTAAATTACTGA 34000 33 100.0 33 ................................. CAATTCTATGGCAATACCCCTCTTCTGGGCGAC 34066 33 97.0 31 T................................ GCTAGAAAGGCCGGCTTTCTTAGCAATGCTA 34130 33 100.0 33 ................................. ACCAAAGACTCTGAAGCTGTGAATATTTTACTT 34196 33 97.0 33 A................................ ATTGACTGTATGCACAAAGCAATGGTTTTCGCG 34262 33 100.0 33 ................................. TAATAAGTTCAAGCAGTCTATCGGCCAATTCAT 34328 33 97.0 33 G................................ GATTATACGGGCTTTCCAGAGATTGGTGTTATA 34394 33 97.0 35 G................................ AGCATATCTTTGCCGGACATACTCTTGGCAACAAG 34462 33 100.0 32 ................................. TGAATGGATGTGGTCTAATCCTGATGCAAACA 34527 33 97.0 35 G................................ ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGG 34595 33 100.0 34 ................................. TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGT 34662 33 97.0 33 G................................ ACCGGTCAGAACATAATCGACGTTGGCCTCGTG 34728 33 97.0 34 G................................ ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCC 34795 33 97.0 33 G................................ TTATTTCATCAGAAGACGACTCACCATTAACTG 34861 33 100.0 34 ................................. AAATCAACGTTAGACCCTGTTGGCGAGAGCATTG 34928 33 100.0 33 ................................. CATCCATCCATCCCAAAGACCGTTGAATACTGT 34994 33 97.0 35 G................................ TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATA 35062 33 97.0 33 A................................ TTATCAGATTGTTGTCGATCACAATCGTGTCTG 35128 33 100.0 33 ................................. ATAGAGACGATAAAGTTTCTATTTGCAAAAAAG 35194 33 97.0 33 G................................ ATCATAATTCGGTTCGGCTTTCGAGCCATCTTT 35260 33 97.0 32 G................................ GGACTTTGAATACGCGATCTTGCCAAGAGAAG 35325 33 97.0 34 A................................ AGACTTTGAATACGCGATCTTGCCGAGAGAAGAA 35392 33 100.0 33 ................................. ACCCAAGGTAATGCTATCATGCAGATAATTCTT 35458 33 97.0 33 T................................ CAACTATAGCCTGCGTGATTTTCCTACGTTCTT 35524 33 97.0 34 G................................ AACGTCTTTACCGATTTCCCCCCATGTATGAACA 35591 33 97.0 32 A................................ ATCTCCCCGAAATGACTGTTGAGTAGAATATT 35656 33 97.0 35 A................................ ACCAGCGAATTACGCCACAAAAACCCTGATTTGTG 35724 33 100.0 34 ................................. TTTAATGACGGACTGCATTTTACGCATACGTGCA 35791 33 97.0 33 T................................ GAGAAATTCTTCCGCGCCTTGACTTTCGAACTT 35857 33 97.0 36 G................................ TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCA 35926 33 97.0 34 A................................ TGAATCTTATCAGTTGCATTATTCGCGAGGCCAG 35993 33 100.0 34 ................................. CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCG 36060 33 100.0 34 ................................. GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAA 36127 33 97.0 34 T................................ CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGA 36194 33 100.0 32 ................................. GCTCTATCTGTCCGCAGGCAACAGGCGGGTTT 36259 33 97.0 35 T................................ ACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCA 36327 33 97.0 34 T................................ AAAACAAACTTGACGAATCACTTCGGGGTTATCA 36394 33 97.0 32 T................................ CATTATTCACAAGAGCGCGAAGTTTGCCGGAT 36459 33 97.0 33 T................................ GGATCTCTGGAAACAATTATGTCAGGTGCGGCT 36525 33 97.0 33 G................................ GTCCCCAAGGCAGAGAAATCATCGACAGGCATC 36591 33 97.0 33 G................................ GGTAAAGAAGGCGCGGCTTCGATCGCGACAATG 36657 33 97.0 32 G................................ AATGCTTTGAAGCTGCTCAATGAGTGGCTGCA 36722 33 97.0 32 T................................ CGGCAACGTCAGGGTATGATTACCGAGCCTTT 36787 33 97.0 32 A................................ TAACAAAGTGTATCGAGCACACCGAGGCAATA 36852 33 97.0 33 A................................ TTGATCGTACCCGTTGCATCTCGCTCGCGAGCA 36918 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ==================================== ================== 50 33 97.9 33 CGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Left flank : TGTTGGTTTTGGTAACTTATGATGTCAGCACGACAGAAGGAAACGGAGCAAAACGTCTTCGCGCCGTAGCAAAATCTTGTCGTGATTTCGGACAGCGCGTACAGTTTTCTGTATTTGAAATTGAGGTAGACCCTGCTCAATGGATAAAACTTAAGGCGCGATTAGAAGATATTATCTTACCAACAGTGGATAGTCTCCGCTATTACTATCTCGGGGCTCATTGGCAAAAACGGATAGAACACGTTGGAGCAAAGCCCGCGACTGATTTAAACGCTCCGCTCATTATCTAGCTTAGCTTCTATCCTTGATACATCTTTTTTTCTAGTGCGAACCATAAGCGTGCTGTACGACTCGCGGAGGTCCGCATTCAGCTTTGTTATTGAAATGACGCAATAATTTTGTACCTAAGGGAAAGGTGCTACCTAAAAAGATTTTATTATCCCATACTTCGCATATTTATCCTTTTAATCTTAGGATTTTCTGTGCTTTACAGTAGGGAA # Right flank : CAGAGCCAACTTGCCGGCAACGAATAGGCCATCGTCAAAATGCCGCCTCTAACAAATATTGGGTTCAGTCTCTTTACTGGCTTTGGTGAGCCTCTTTGGGCAGAAGTGGTACAACTTATATAGGTTCTAAATGCTTCCAGCACCCTAATCACAGCATCATTATGCTTGCCTGATGTGAGATAGTCATTTCAGTAAACCTAAACCGTGCCGCTTTCTCGTTCCTGATACGGATAAAGCAAGAGTCCAGGATGCGAGCGTTGGTGAGTGTTTCAGCAAATACTTTCAAATTGATATTTCGCTAATGCGAATTGTTAAAAGTCTTGCAGACCCTCGGAATTCCAATTTTGCTTGTCAAGCCTGTGAGCGTAGCGAGCAGCACTCAGAGATAAACGAGCGATGTGCTTTGAGAAGGATAGCTGTCGATGTCATGGAGACAACTATCTTATCTGGATAAGGAGGCGGGTAGTTTTATCCGGTGAAAAAGACATTTTTTTCGTTTA # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127179-126365 **** Predicted by CRISPRDetect 2.4 *** >NC_013355.1 Zymomonas mobilis subsp. mobilis NCIMB 11163, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127178 28 100.0 32 ............................ CATTCAAGAGCGCGTCGATAAGGCGCTAGCGA 127118 28 100.0 32 ............................ ACAAGATTGTTGCGCCACAGCTATGCAGCAAT 127058 28 100.0 32 ............................ GTAAGAAACTTTGGGTATGTCTCTTTTGACAC 126998 28 100.0 33 ............................ ACTTGGCGGCCGCCAAGAAATGACGATCGTTAA 126937 28 100.0 32 ............................ AAGATCAATCGGCAGGGCTTTACTGGAAAAGT 126877 28 100.0 32 ............................ TTATATTTCCCGTTCAGCCAGTCATTCCGATG 126817 28 100.0 32 ............................ TCGAAGTGAGGCAAGATGCGCAACGATATAAT 126757 28 100.0 33 ............................ AAAATCGTCGTATCGCGCCAATTTGCAGCTATG 126696 28 100.0 32 ............................ ATCGTGGTTAGCGGACTGGGCGGCGCGATCAG 126636 28 100.0 32 ............................ GGATGATGACCAAGTGTGGCGGTTGTTTTTGC 126576 28 100.0 33 ............................ ATTGCTTGTGATATAGCTATATGTGCTGCCATC 126515 28 100.0 32 ............................ TTTTTCGTTTCCTTCATCGTGCAATTCCCGAA 126455 28 100.0 32 ............................ TTATGCCCGTGGTGAAAAAAGATAGAATTTCT 126395 28 89.3 0 ............G.............GT | GTT [126371] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAGACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATAGCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGGAATAAGAGCCATTCAATGCTGCACATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAGATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTATTATATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTAGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTACGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACGATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGCGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATAGGCATGGCGACATAATAGGCCATAGAGGCACCGACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1255057-1256049 **** Predicted by CRISPRDetect 2.4 *** >NC_013355.1 Zymomonas mobilis subsp. mobilis NCIMB 11163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1255057 28 100.0 33 ............................ AAGAATATGTTCGTGACCGTGATAATCCAACAA 1255118 28 100.0 32 ............................ ATCCGCGCCGCATTTTTTGTCAGCCGCAATCA 1255178 28 100.0 33 ............................ AGCGAATAGCTGAAAATTTATATTTCAATTCGT 1255239 28 100.0 32 ............................ TGAAATGTTGGGCGTTAACAAACCCTCGTGGT 1255299 28 100.0 33 ............................ AAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTA 1255360 28 100.0 32 ............................ TATGGGTTTATGATACTTATTGCCTGTTTTAT 1255420 28 100.0 32 ............................ CGCTGCACCCCGTCCCAGTGCAAGCCCGACAG 1255480 28 100.0 32 ............................ AGTTATATCAATAAATGAACCATCCTTTTCAT 1255540 28 100.0 32 ............................ AAGAAGATCATAAAGACGACGAAGATGATAGC 1255600 28 100.0 32 ............................ ACACCTCCAAGTGTCGCTAATAGCCTTTGTCC 1255660 28 100.0 32 ............................ TGCCTCCTCTCTAGCGCGATCTGGCGCTAGAG 1255720 28 100.0 33 ............................ TATCTATTGCCGATTCGTTACCAATTAAAAAAC 1255781 28 96.4 32 ..................G......... ACATGGATTTTTCAGCAGCCAATAGCATGTCC 1255841 28 100.0 33 ............................ GTTTGGCACCGCGATAACATCAACGTTCCTACT 1255902 28 100.0 32 ............................ ATTCGTCAAGTAGCGTGATGCTATCATAGACG 1255962 28 100.0 33 ............................ GTAAGCGGTGCAATAGTTAAATATCACTGACCA 1256023 27 89.3 0 .....................A.-C... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCGCAAAAACAGGACGCCGCTGCCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACGCCGCCTCAATTTTTGCCCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCTTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : ATTATCAAAACCGACGCCGATTATATCCCCGCAGGTAGCCTTCAACATAAAATCATTTAAAAACAATCACTTATCAGCCCATACATTACCCCCTTCAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGTTGAGAGCAAACGGCCTCACCCTGCCGACATCTCCTAAATTTATCTTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTTTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCGCTATATTACGTCTTCACAGGCTGGCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1911667-1909883 **** Predicted by CRISPRDetect 2.4 *** >NC_013355.1 Zymomonas mobilis subsp. mobilis NCIMB 11163, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1911666 28 100.0 33 ............................ GCCGGAAACATTGCTGGACAGTCAATTACTGGA 1911605 28 100.0 32 ............................ AAGGTTAATTTTAGATGCTATTGGTGATTTAT 1911545 28 100.0 32 ............................ CACGCCCCAAAAGCCGATGAAATCCGCGTTCT 1911485 28 100.0 33 ............................ CGACTGAATGTTGTCAGACGTAAGCGTCTTAGA 1911424 28 100.0 32 ............................ ATTTCAAAGATGGTGAATTAGTGCTTGCTGAT 1911364 28 100.0 32 ............................ AACGGCTATAAGCGCAATGTTACGCCAGATGG 1911304 28 100.0 33 ............................ TAAAACCTCCGAAAAAGGTCTGCGCTACAACAA 1911243 28 100.0 32 ............................ CAGTTTACGAGTGAGTTTTGCGATGTCCGTAT 1911183 28 100.0 32 ............................ AGACGATCAAGCGGCAATTCAGGGGCGTTTTC 1911123 28 100.0 33 ............................ TCACCGTGAGGACGTGCAAATTAAAGGTGGAAA 1911062 28 100.0 32 ............................ TGCTCCGCCCTCTGTTGCATTAGAGCCGCCGC 1911002 28 100.0 32 ............................ AGGAATTAAACAAAAGGCTTCAAAATGGCAAA 1910942 28 100.0 33 ............................ AAGGGTGGCAACAGCGAAGAGAAGATCAATTCT 1910881 28 100.0 32 ............................ GTAGAAAAAGAACTGCGGGAGCGCTATGTCAT 1910821 28 100.0 38 ............................ CTCGACGAATACAACGGCACCGATGAAGGTTACGAGGA 1910755 28 100.0 33 ............................ GAACGGAAGGCTTTTTGCCTAACACTAAGTTTT 1910694 28 100.0 32 ............................ TTTCAATATCTGTATAAATCGGGTCAATAAGT 1910634 28 100.0 33 ............................ AGCTTATTTCAGACAAGATGCTATACGAAATTT 1910573 28 100.0 33 ............................ TGAATATGTAAACGAGGCCGTTGAGACTTTTGT 1910512 28 100.0 32 ............................ ATGTCGAAACGTTATTAGAGAATAAGCCAATT 1910452 28 100.0 32 ............................ CCTGCAAAATCTAAAAATAGTCGCCTGTGCAT 1910392 28 100.0 33 ............................ TCATCAGCCCATTGTTAACATTATGTATCTTCA 1910331 28 100.0 32 ............................ GCGATCTGACCAATATGTTCCTGCGGTCGGGT 1910271 28 100.0 32 ............................ AATCTTCAAAAGACCGGACATAGAAGACAGAC 1910211 28 100.0 32 ............................ AACAAACCCGTCAGAAAAGACACTAACATCTA 1910151 28 100.0 32 ............................ CGCGATACTCAATAATCAGAAAGCGACCAACA 1910091 28 100.0 33 ............................ ATTGGGCGATGGGCGGCTGATGCGCTCGCCAAT 1910030 28 100.0 32 ............................ TGTCTGTATAACGGGACACCATTGATCATAGG 1909970 28 100.0 32 ............................ GTAAAGTCAGCAAAGCCGCAATGAGTCGTTGC 1909910 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 30 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACGAGAAGTAAGTTGTAAGCCGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATAAAAAGGCCTATTCCTTTTACAGAGGAGACAGTGAGAATGAGGTTTTTATTGGTCAATCGGAATAATTATGATCGGTAGAATATGAGGTAAATAAATAACCTAATTTCATTCTTGCTATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTGGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTTGGGTTATTTGGCGATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : AAATGCAAGCAGAAAATGCGAAATATCAAGCCGAAGAAGATAGAAAATCCGAAACTTTGGCTCTTACAAAAGCTAGATCAGAAGTAAAGAATCAACCTAATCCTTGAGAAGATTCAAAATCTTTTATAAATACCAATTTTAAAAAAACTTTTCACATGAAATTTTCATAAATTTATTAAAAAATGGATATAAAATGAAAAAAATTCTTTTACTAATAGCCATAAATTTAATTTTTTCCGCTAATTTACTTTCACTTACTGCATGTAAAAAAGAACATGTCAAAAAAACATGGCCTGATAATACTAAATGCGAATCTCTTTTAAATGAAGATGATATCAATGATTGTATTATGCAACAAAGATCAAAAATAACGCATCAACCTAACCCGCGAGAAGATTCAAAATCTTTTATAAATACTGATTTTTAAAAATAAAAAGCTGGAAATAATCCACATGTTCACTGCCGCACAGGCAGCTTAGAAAATATCCCAGCCTGATCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //