Array 1 143950-141198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLK010000005.1 Listeria marthii strain 2012L-5525 NODE_4_length_398827_cov_24.148_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 143949 29 100.0 35 ............................. CTGAAACTGCTGAACAAAAACGCATTCGAGAACTG 143885 29 100.0 37 ............................. ACAAAAAAACACCCGCATTTTTGACAAGTGTTTTTTA 143819 29 100.0 35 ............................. TCAAATAAGCAGGGCTTGTTTTTAAAATGTTTGAT 143755 29 100.0 35 ............................. TGAACCAACCTGGTCGGCAGTCCATCCCCATCCTA 143691 29 100.0 37 ............................. TATTCTAGACCCAATTTTGTGATACCTGATTCAAGAA 143625 29 100.0 38 ............................. ATTTGATGAGTGATAAAGAATACGAGGCATTTAAAATT 143558 29 100.0 36 ............................. TAAGCTAGTAATCGCAGGACTTGCTTTTCTCCATGC 143493 29 100.0 36 ............................. TTTACTTTCGATATATCTAAACGTTTTTGACTTGCA 143428 29 100.0 35 ............................. ACGGGAGGACGGTATGAGCGACTTTGGAGCCAATT 143364 29 100.0 35 ............................. TTGTAATGTGACCCGTCTTTTTTATCTTTGCTCGC 143300 29 100.0 34 ............................. TTTTCTTTTTCAAATCAGCAAGCGATTTTTCGCC 143237 29 100.0 37 ............................. TACATTGCATTCGCCGCCGTGTTCCCCATCGATTTAG 143171 29 100.0 34 ............................. ATCCATAATATCCACATTTGCCATCGAGCTTTTC 143108 29 100.0 35 ............................. TTTGTTTTCAATACATTAAGCACGAATTCCTCAGC 143044 29 100.0 35 ............................. GCCTAACTTGTCCGAAAAATACTTGTCTGATTATT 142980 29 100.0 37 ............................. TAAAATCTTAGCTAAAACAGGTGACAGCAATAACAAC 142914 29 100.0 36 ............................. TTTAAAAATCTCTCTTTTGAAACGCCTGGGCAATGT 142849 29 100.0 37 ............................. TTGTTAATTGTAACGACAACCGCCGGGAAAGACCCCA 142783 29 100.0 36 ............................. GGTATCGTTGGAGCATTTTGTAAAACCTACATGATT 142718 29 100.0 36 ............................. GCAAGAAGGGCGTTTTTAAGGGGAGAGGACTTCGAG 142653 29 100.0 37 ............................. TTGCTAAAAGGTCGTCGAAAAGCCGAAAATGTAAAAT 142587 29 100.0 36 ............................. GACGAAGAAGATTTTGCAGTGGCTATGGCAGATATT 142522 29 100.0 35 ............................. TTATTTTGAACTAGTTAACGACATGTCATCATGGA 142458 29 100.0 34 ............................. CTTTATAGAAAAACATCTTTTTGCTATTCATAAC 142395 29 100.0 36 ............................. ATTATAGAAAGGATTGAGTAAAAATGAAACTAGAAA 142330 29 100.0 36 ............................. GCAGATATGGGCGATAAAGATTTTAAGTTTAAGACA 142265 29 100.0 36 ............................. ACATTTGTTGCTGGAATAAGTGTATCTACGATTGTG 142200 29 100.0 39 ............................. ACGAAGAATTAGGAATTAAAGCAGTAGATGACTATACTT 142132 29 100.0 34 ............................. CCACTTCCTTCGATTGCTGCTTGCACTAAATCTC 142069 29 100.0 36 ............................. ATACTTTGATTTTGGTTACTTTTTGAATCGGTTTGT 142004 29 100.0 37 ............................. ATATGCTGGCAAGTTTATCTTGATGTTTCTGACTATC 141938 29 100.0 35 ............................. TTGTCTGATGGGTCGCAAGGTTGTACGTGGTATCC 141874 29 100.0 35 ............................. AAGTATTTCAATAACTTAGCAAGAAATGAATATCG 141810 29 100.0 36 ............................. TACGCTAAAAGTATTTTGGCTGGGAATGTGATTGAC 141745 29 100.0 36 ............................. TCCTTTGGAAAAACTAGGCATTGAAACAACGACTAC 141680 29 100.0 34 ............................. GAGGGTCACAAGATAGAGATAGACACTGATAACG 141617 29 100.0 37 ............................. CACACATCGCGCAAATCATTTCAGCATTTATAACCCT 141551 29 100.0 35 ............................. TTGATTGACGAAGCAATGCGCATAAATGGATTTGA 141487 29 100.0 34 ............................. GTTTCCATATCCTTTTTAAGAATTTTCACTTTAG 141424 29 100.0 36 ............................. ATGCGTCGTGAGGTACCTCTTAAGCGAGGGACACAA 141359 29 100.0 36 ............................. TCGTGAGCTATTTGCGAGTTTGTAAGCGTGTATTCT 141294 29 100.0 38 ............................. ATGATATATCGCAGGATAGCGTCATTAGCATTCAATCC 141227 29 86.2 0 ...............C......CC....C | A [141202] ========== ====== ====== ====== ============================= ======================================= ================== 43 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTGGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCTGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGACTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAAGCGCCGGCAAGCCCTGCTTTACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCTGCTCCCGCAAAAAACAATCCCCACACAAGCCCAGCCGTAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCCTTCTCGACACCGAACGTTTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 160535-160056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLK010000005.1 Listeria marthii strain 2012L-5525 NODE_4_length_398827_cov_24.148_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 160534 29 100.0 36 ............................. AATAGTTTAGAAGGCGATCTATTGAAAATGACATTT 160469 29 100.0 35 ............................. AGCGTCCATCTTTATATATTTTTTTCGTGATATAA 160405 29 100.0 36 ............................. GAGATTGCAGGACAGGTCCAATTTGCGCGATTTGTG 160340 29 100.0 37 ............................. ACATTACTGCAAAATGTTGAAACAGGGCATGCGCCTT 160274 29 93.1 34 .......................A...A. ATTAATAAAGAGATTCGCTGGATTTTCAATTTTG 160211 29 96.6 34 ..............A.............. CGGCAGAAGTTATATCTATGCTTGCAGGCACATT A [160183] 160147 29 89.7 33 ............C...A..........A. CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 160085 29 75.9 0 AC.....T......A.A......A...A. | A [160061] ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.4 35 GTTTTAGATACTTATTGTGAAATGTAATT # Left flank : GCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCTGTAGAAGTCATCGCTTGTGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCATGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGAAGAGTTTGGTGGTTTTTTTCTTTTGAAAATCATGTGGAAAAGGGCGGATTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGACTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCTAGCGG # Right flank : GAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //