Array 1 164588-163460 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVM01000010.1 Salmonella enterica strain BCW_6288 NODE_10_length_164896_cov_3.21212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164587 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 164526 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 164465 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 164404 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 164343 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 164282 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 164221 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 164160 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 164099 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 164038 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 163977 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 163916 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 163855 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 163793 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 163732 29 100.0 31 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGG 163672 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 163611 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 163550 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGGGAAAAATC 163489 29 96.6 0 ............T................ | A [163462] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4-337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVM01000012.1 Salmonella enterica strain BCW_6288 NODE_12_length_153179_cov_2.8482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ............................. CGAACCCTGACCAACGCGGAACAGTGGTCTAT 65 29 100.0 32 ............................. CGAACCCTGACCAACGCGGAACAGTGGTCTAT 126 29 96.6 32 ............................C GCCTCTTCGCGGGTGTCATACCTCGTATACAG 187 29 100.0 32 ............................. AAATCAGCCTGAGCCGGATATTCCTGAGCAAC 248 29 96.6 32 ............................A ATTATCGGTACGAAAAATCTCGTACAGTGCAT 309 29 89.7 0 ............TC..............A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTGTTCCCCGCGGTAGCGGGGATAAACCG # Left flank : GGTG # Right flank : AAAAGCAGCATAAATCCCCTTAGATACTCCCGCTGAAGTTGTTACTGCCGCCGCTGTCATACCGGTTGTGGTCGGCGCTGATATTTCACGCTGTAATTCACGGTCTGCTGCATACTGCCCCGGTTATGTTGTTATTTGATGTGGCATCCCGGTAGTTCAGTTGGCTGGCTGACAGGGAGGCATGATGTGAAATATTCATCCGGAGCGGGGGGAGTTTATCCTGCCGGAGCAATATCTTTCTCCTGTACAGCCAGTATCGTGGCTGGTTATCTGGAAACGGAAGGGATAGCGGTCGTGTTGCTGGATGAGCATATTGTCCGGAATAACCAGTTACAGGCACAGATGACGGGAGACGTGGAGCTTCTGGTGAAACAGCAGGATCTGGAAGCTGTCCTGTCTGTTCTGAACGATATCAGACAAGGGGCGTATTGTCCGGAGAAGGAACATGAATACGCCAGGGAGGATAATGTATCAAAAAACAGCCGGATGTGGACTGTACT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3634-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVM01000033.1 Salmonella enterica strain BCW_6288 NODE_33_length_3942_cov_2.27814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3633 29 100.0 32 ............................. GTATAGCTGATTTTGCCGTCAGCCAAATTAAC 3572 29 100.0 32 ............................. CTCGATTCTGCAACGTTAATTCGTTCGATCCG 3511 29 100.0 32 ............................. CGATCACAAAGAATGCTGACGGTACAGAAGAA 3450 29 100.0 32 ............................. ATTTCGGCTTTTATGCTTGTTGTAAATCAGGC 3389 29 100.0 32 ............................. AGTATTAGGAACCTGAAACGCCTTACCATCAA 3328 29 100.0 32 ............................. CGCGTGAAAGTATCAACGACATTATCTCATTG 3267 29 100.0 32 ............................. ACGGACACGGCAAAATAACGCGCTACGAAGCC 3206 29 100.0 32 ............................. CCGACCCAGATTTTCACGGGACACCCCCAGAA 3145 29 100.0 32 ............................. AAACCATTCCGGATCGTTCGCCATATCTTCGG 3084 29 100.0 32 ............................. CACAACCGGAGGGCCTGTTTAATGTTATATCT 3023 29 100.0 32 ............................. CCGAAATTATCGAACTGGCAGAACAGCGCAGC 2962 29 100.0 32 ............................. ACATTTTGTGCTCTTTTGTTTAATTATTAACC 2901 29 100.0 32 ............................. TCGTGAATGACTTTCACCTCCGCGCCATATTC 2840 29 100.0 32 ............................. CACAGTAAGACTCAAATTACTCAGCACCTGAA 2779 29 100.0 32 ............................. GGCGTGATTTCCGCCACCCGTTTTAACCCGGT 2718 29 96.6 32 ............................T GCCGCGAAAGCGGCTTGAAGGGCGCGCCTTAA 2657 29 100.0 32 ............................. GCTAAATATCAACTCCGCAAGATTTGCCCTAA 2596 29 100.0 32 ............................. AGCCATGAAATCAACCCGGCAATTCTTGTATG 2535 29 100.0 32 ............................. TACATGGATATGATTTATTGACTCAGGAACAG 2474 29 100.0 32 ............................. CAGGGAGTATAGTTTTATGCTCAGAAAACTGC 2413 29 100.0 32 ............................. CCGTTTCGCGCAGTATTGATGATTCGGTCATT 2352 29 100.0 32 ............................. GTGTTGACGATGGCAAGGGAACATCTGTCTGT 2291 29 96.6 32 ..........A.................. ATCTGAGCGGCCACTTTTTCGGTTGGGCGGTC 2230 29 100.0 32 ............................. ACCGTCGCGGCTATTTGATTTCCGTCCGTTTC 2169 29 100.0 32 ............................. CTGTCGGTCAGGCTTTGAAAGTGGATTTTGCG 2108 29 100.0 32 ............................. CCGGTGCCGAAACTGTTGAATACGGTGGTGAT 2047 29 100.0 32 ............................. ACGTGACCAATGGCACAAGCTGAGTAATCAGC 1986 29 100.0 32 ............................. TATCCGAAGCTGCGCGCGGAGTTCGTCGAGGT 1925 29 100.0 32 ............................. GTGGGGTTCGGCCACGCGCACGCCATACCAGC 1864 29 100.0 32 ............................. GACGACGATAAAATCCGAATATACGTTGTGCC 1803 29 100.0 32 ............................. CAGGATTTATCGACGACACAGCAAAGAACGCT 1742 29 100.0 32 ............................. AAACATCAACGTTTATACGGGGTAAATTAATA 1681 29 96.6 32 ............................A TGATGATTTGCGGGTTTTTATGGTGTACGGTC 1620 29 100.0 33 ............................. AAGGACGGGGATATTGTCGTTTTGTCCGGCCTG 1558 29 100.0 32 ............................. ATTAACGTGTTAATCGTCGTTCTGCGGGCGGT 1497 29 100.0 32 ............................. ACGTGCGCCGTAGCTGCTGCCTGATTAACAGC 1436 29 100.0 32 ............................. TTCAGCCAACAGCAACACGACAGTATTTACGG 1375 29 100.0 32 ............................. AATATTAACGAACAATTGAGCGATTACGCAGA 1314 29 100.0 32 ............................. GAAATTCGCGATGCTGACCTGCGCCAGTTAAC 1253 29 100.0 32 ............................. GTGGGCGTATTGTTTACCCCGGTTGTCGTCTG 1192 29 100.0 32 ............................. CCGTTTCGCGCAGTATTGATGATTCGGTCATT 1131 29 100.0 32 ............................. CTGGGCGTTCCCGTTCCGGCCGTGCCGGTCAA 1070 29 100.0 32 ............................. ATGAAGGTCGTCCGCTCAGTATCACCCCCAGA 1009 29 100.0 32 ............................. ATGTTGTTATCACTCACAAACGCAAATCCCCA 948 29 100.0 32 ............................. TACATGGATATGATTTATTGACTCAGGAACAG 887 29 100.0 32 ............................. CGTGTAGTTCTGACTGGTGTCGGTGTTTCTGC 826 29 100.0 32 ............................. GCCCGCTGTTTCGCACCGTCTGCGGTGATTTT 765 29 100.0 32 ............................. ATTTCAACACCTTCTGTGCTCATTATTACTCC 704 29 100.0 32 ............................. TTCATTGCTGTATTTATACCATTTCAGTGCGA 643 29 100.0 32 ............................. GTATATTGACTGCGTGCGCTATTCTGCAGAAG 582 29 100.0 32 ............................. CCTATTAACCTGTCACGCCTGTTTGATCTGGT 521 29 100.0 32 ............................. CGAACCCTGACCAACGCGGAACAGTGGTCTAT 460 29 100.0 32 ............................. TTCTTTTTTGGCGACGGCTTTTGCTGCTTTTG 399 29 100.0 32 ............................. GTAATCACTCATCAGATAGTGACGCCGCTAAG 338 29 100.0 32 ............................. CTGTAATAATAATCGCTCATTGATTTATCTCC 277 29 100.0 32 ............................. GCAAAACCCCGCCCGGAGTTGGATTCAGTTTC 216 29 100.0 32 ............................. TTCTCCGGCTCTGCGCGTGCGCTTGAACGTCT 155 29 100.0 32 ............................. GTGAAATATTATCGGGAAGGTCGTCGCGTGGT 94 29 100.0 32 ............................. TACATGGATATGATTTATTGACTCAGGAACAG 33 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.8 32 GTGTTCCCCGCGGTAGCGGGGATAAACCG # Left flank : GCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCTTTGAAAATCAATGAGTTGAATGTTATTTAATAATAAGGAAATGTTATCTAAATGTTGGTTGATTGTTGGGTGGTAAAAAAAGCGTTCTGGAACAAATATATAGATTTAG # Right flank : GCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 462-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVM01000053.1 Salmonella enterica strain BCW_6288 NODE_53_length_465_cov_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461 29 100.0 32 ............................. CAGGGAGTATAGTTTTATGCTCAGAAAACTGC 400 29 100.0 32 ............................. CAGCATTTTACCGTTTATATAACTACGTTATT 339 29 100.0 32 ............................. CAACGAGTACAGGAAAGCGTTAATATACTTAT 278 29 100.0 32 ............................. GGTTACATTTCCCCTGCCCCTCATAAAACGGG 217 29 100.0 32 ............................. TTGCCCAATCCCGATCCGATACTGAAGGCGGC 156 29 100.0 32 ............................. TAGATAAAATGGTGCTGCCTGATGCAATTACA 95 29 100.0 32 ............................. CCTATTAACCTGTCACGCCTGTTTGATCTGGT 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGGTAGCGGGGATAAACCG # Left flank : ACA # Right flank : GCGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //