Array 1 3752-2873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHS010000015.1 Clostridium perfringens strain 1805-160 NODE_15_length_62550_cov_123.841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3751 29 100.0 36 ............................. TCAGCAAAAGCTCTAAACTCTAAAACTTTTAAATTA 3686 29 100.0 36 ............................. TATCAAGTAAGTAAAGGTGAAGAATTTATTGTCTCT 3621 29 100.0 36 ............................. TGAACTTCTTTATTTCAGCTAACTTTTCTTTATACT 3556 29 100.0 36 ............................. TAGTAACGCTTCGCTCTATCTGCGATGCCACTTTAA 3491 29 100.0 36 ............................. GTTTTTATCCCACTTGAAAATGGTTCAGTGCTAAAC 3426 29 100.0 36 ............................. TCTATTTTATCTATCCACACCTTTAAGCCTCTAACC 3361 29 100.0 36 ............................. ATAGTAAACAGCCATTTCAGCACTCTATCATACTTA 3296 29 100.0 37 ............................. GTTAAACCTTTCTCGCCTTTAGCTCCAGGTTCGCCTT 3230 29 100.0 36 ............................. TGGGTTAGAAGGTTTAGATCAGGCTAGTAAAGAAGC 3165 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 3100 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 3033 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 2968 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 2902 29 86.2 0 .................GAA....C.... | T [2875] ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 40801-39052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHS010000020.1 Clostridium perfringens strain 1805-160 NODE_20_length_48877_cov_120.326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40800 36 86.1 30 A...ACA...A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [40786,40792] 40732 36 100.0 29 .................................... TAATAGATTCAGATGATAATGACTACGCT 40667 36 100.0 30 .................................... CTTCTTTTATTAGCTTATTTTTATTTAAAA 40601 36 97.2 30 ......................A............. ACAAATACTAGCCTTATGAATGGACAAATT 40535 36 100.0 30 .................................... AAGAAACATTGCATATTATTAAAAGCAATA 40469 36 100.0 30 .................................... GATATGTTAAAAGCATATGGGCCAAAAATA 40403 36 100.0 30 .................................... CTTAGAATACAACATGTATATAGTTTCCCT 40337 36 100.0 29 .................................... CTAAGACAGAAAGAAAGAATAGCGAGCCT 40272 36 100.0 29 .................................... TTAGTTATGCACATGATGTTGCAGGAGCT 40207 36 100.0 30 .................................... ATTATACCAGGGTTTGAAACTTCTGCTGCT 40141 36 100.0 30 .................................... ACTATGCTTTACAATGAATATGATTTAGCT 40075 36 100.0 30 .................................... CATAGTAGTCGTTAAAATAATAAGAGCTAT 40009 36 100.0 30 .................................... TGTATTTGTGGTTATATGCAGTGCAGAATT 39943 36 100.0 30 .................................... GGTAACATTACAAGTATCTGTATTGGTGAA 39877 36 100.0 30 .................................... TATCGTCCAGAATGTAGTACATGCACTGAT 39811 36 100.0 29 .................................... TTAAGTTTAACCTTAATGGGCAAGAAGTA 39746 36 100.0 30 .................................... TCATTAACATTTTTCTGTATTCTATTTCTC 39680 36 100.0 30 .................................... AAATTAGAAAGTGGATTACCGAGCATTCGG 39614 36 100.0 29 .................................... TTAAATATACTTGGATTAATGCAGATGAA 39549 36 100.0 30 .................................... AAAAAGATATATGATAAATCTAAACAGTTA 39483 36 100.0 30 .................................... AAAGATCCTAATGGAAATTTAACTTGTTCT 39417 36 100.0 30 .................................... CACTTTGTACCCACATAATGTATTACTGTA 39351 36 100.0 30 .................................... CATTCAATGGAAGCTTATGTTATTCTTTCT 39285 36 100.0 30 .................................... TCTTGATTTCTTGATATCTAGGTTTTTGCT 39219 36 100.0 30 .................................... ATACCATTACGATCACACTGACATATAGCT 39153 36 100.0 30 .................................... GGTAGGAATGGGACTCCAACTGGAAGTGTT 39087 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.4 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //