Array 1 136558-136160 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCC01000010.1 Nitrosomonas sp. HPC101 HPC101_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 136557 37 100.0 39 ..................................... ATGAAGGGTGATCAGTGGGATTCGTTGGCACGTAAGCAG 136481 37 100.0 34 ..................................... AAGTGCTTTCCATGGGTCAGATCGAACAGATGAT 136410 37 100.0 35 ..................................... TCTCCGATCCTGCGGCAATGCGCAGCCTGCTGCTG 136338 37 100.0 34 ..................................... GCAGTCCATGGACAGGAAATCGATATTGAAGGCG 136267 37 100.0 34 ..................................... ATTAATGTATTGCTTGGATGTTGACCCAAGAGCA 136196 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 35 GCAGCGCCCGGTCACCAGATCGGGCGAGGATTGAAAC # Left flank : CGGCTACCTGCCTTTCCTGATCCGGTAACCATGCTGATTATTGTCACTTACGACGTTTCAACAGAAACCAAAGCAGGCCGCAGACGATTGCGACGTGTTGCAAAATTATGTGAAAGTGTTGGTCAGCGCGTGCAAAAATCGGTATTTGAATGTCGCATCAGTTTGATGCAATACGAAGATCTGGAACGTAGATTATTAGCAGAAATCAATGAACAAGAGGATAATTTACGGCTGTACCGCTTGACCGAACCGATCGAACTTCACGTAAAAGAATATGGAAACTTCAAGGCAATTGATTTTGAAGGCCCTCTCACCATCTGACGAACGCGAACCAGTAGCTGCGACGCAATACCATCCGGTTCGCGTGACATCTAACTGCATGATCTGGAACGAGAAATGAATCTCTTCTCCTCCCGTTTACTTTATGCAACCAGAAAAAACTTCAGGTTCGCGCAAACCGCCCGAATTTTGAATACAGATCAGTCGGTTATAACCGTACT # Right flank : TGGTGCGCTCTTTGTCAACCATCCACATAATCCGCAGCGCCCGGTCACCAAGTCACACAGCCATTTCCCGGACTGGATAACGTATACGAAATTGTGGATAACCCCGACACCTTGTATCGAAAGCTGAAACAGGTTGAAGTCAGGCTTGCGGATGATTTAACGGCGCCAGGTGATTGGCAAAATATTGCCGATACACTGGAAGAACGTTCGACCGCTCTGAGGTTCTTACAATGCAGCTATAGACTAAATCCGAAATTTCAAACCATTGGAATAATATAATTTCCATGAAAACCAATGTATAAGAGGAGCTTTTAATGCAGTTTAGAGCGGATATTCAGATACTTAGAGGAGCATCTGTACTACTTGTTGTTCTATTTCACCTTGGATTTGATCTCTTTAAAAGTGGATTTCTTGGTGTTGATGTATTTTTTGTAATTAGTGGCTTCTTAATGGCTGTTCTTTATGATCACAAAGAAAAATCAAAATTTTTCAGACGTAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCCGGTCACCAGATCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.20,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 86635-86322 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCC01000009.1 Nitrosomonas sp. HPC101 HPC101_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 86634 36 100.0 32 .................................... GTTTTGACATAGATAATTTTCCATTAACTTCT 86566 36 100.0 34 .................................... GCGGCTTTGTTCTTGACATTTCTTCACCAAGCAG 86496 36 100.0 34 .................................... ACACTGTTATATGCTGATGTTGACGATTCACTTC 86426 36 100.0 34 .................................... ACCATAGAAGTTCTCAAATGCAAATGTTTTTTCC 86356 35 91.7 0 ...............................-.C.A | ========== ====== ====== ====== ==================================== ================================== ================== 5 36 98.3 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : CCCGTACCCGCCGAGAGGCATGATCATTCTTCTGCAGCAGGCGAATATGAGTGATTTTGTCATCTGCTACGATATTTCCAATCCGCGCAGATTGGGGCGTCTGTACCGCTATCTGCTCAAACGGGCTATGCCGCTGCAATATTCGGTCTTCCTGTTCAGCGGGGATGATCGCCAGCTGGAGTGCTTCATGCAGGACGCCATTGCGCTGATTGATGAAAAACAGGATGATTTGCGTGTTTACCCACTGCCCGGCCGGGGGCTCAAGGCGCGCATCGGCCGACCTGCGCTGCCAGAAGGTATACAATGGAGCGGTATGCCGGCTGAATGGTAATCAAATAATTCGTTGAGGCGAAACAGAGGATCCGGGTTAATATTTCCGGGAAAATGCCGTTTAGCCTGCTCTTGACTAACGAAAAAGGAGGTAACTTGCAGCACCCCACCTGTTTTCCTCAGCACACCGTGCAATCTATTGATTTTACGGGGAAAAAACAGAGTGATCA # Right flank : GCCACCGGTTGTCCACATGTCTTATGTTATTCACTGCCGATTTTGCGGTGCATGGAAGATGTTTTTGATAGCTCGGCTCGTGCCATCAGGAGTTTGCAGCCCTCAAGTATCAGGAGCAGCCCAATACCCAGGCCCAGGGCCAGAAGCATGTCGTTCCAGGTAATCGATCCGAATTTCAGCAGTGCCTGGGCTCGCGGCAGTAACAGCACCAGGCCGGTTACGCAGGCCACTGCCAATACAACATACCCCAGGGCTGCATTTTTGCGCAGAAAAGCATCGCGCAGCGATGCTCGAAAAGAGCGATTCACCAGGATCAGCGCCACGATCTGGGCAACCAGACCGAAAAAGATCAGCGCTCGCACTTCGACTTCCGGGACACCCGCCGCGGTTTTTGCAAGAAAAACGACTGCCAGCATCGCGAAAGCAATGCCGCCTTGCATGATGCTCCAGAGCAGCATTGAGGGTGAGAACATCCGTTGCGCCGGATCCCGTGGCGCACG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 100565-99902 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCC01000009.1 Nitrosomonas sp. HPC101 HPC101_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 100564 36 100.0 33 .................................... GTCGAGAATCTTTCGCCTTACTAGTGTTGCGTT 100495 36 100.0 34 .................................... CAACCTGGATAGTGCTGTCTCAAGATTGGCATAA 100425 36 100.0 34 .................................... GCCATAAATAATAAGGATACTGATACAACTATCC 100355 36 100.0 34 .................................... ATGGTCCCTGTTTGTTATGCAGCCCAGCAATCTT 100285 36 100.0 31 .................................... CTTGATGAGAGAGGGGTTTTTTTGCATCATG 100218 36 100.0 34 .................................... TAAGCGTCTATAACGATGTTTGCGGCGATATTTA 100148 36 100.0 34 .................................... GTGTATCATAACCGTGTCCTGCTTGGCGATGACT 100078 36 100.0 36 .................................... CACGATCCATTTGGCAACTGACAGGCTAAGCCTTTC 100006 36 100.0 34 .................................... GCATCGGTTTTGCCGATGTACCCCGGAATTGATT 99936 35 77.8 0 ..................CGCG........-..TTG | ========== ====== ====== ====== ==================================== ==================================== ================== 10 36 97.8 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : GCTGGCGTGAAGCAGTAACATACGTAAACAAACAGATTGCCGTCGCCGGCAAAATTATGCGGATTACCGAGCGCAGGGATATCAAAGGCAGCCCGACCTGGATTGAAATCGGTGCTGCCTACCCTGCAAAAAACCGATTGACTCTGATTATCTGGGGCAACCATCGCGCCGGATTCACGCAGCTGAACGGACAAAACGCCGTATCCCACCTGGCTTGCGCGCAAGGTACCGTCCAGCTGTACCGCCAGCAACTGCAAATCGAGCTGAATCAACCGGAACAGCTGGTGTTGAACGGAATATAGCCCGTTATGAGAAAATACGTCTGGCATGCAATCGGGTGTGTAGCGGTTTCAGGTTGAATACAGTGCTTTATTTTTCAGCAAAACAGCCGTTTAATCTGTTCTTGACTGGCGCAAAGGAGGTAACTTGCAACACCCCATCTGTTTTCTTCATCTCCCTGTGCAATTGTTTGATTTTATGGGTAAAAAACAGAGTGGTCA # Right flank : CCGGTGGATGCTTGCTCAGGCGCAGATTTCTGCCGGTCTCCATCTGCACCCTCCACCCACCTGAAACACCGCCGGATCAGATATACCCTTAAAAAATCCGCTCCACACGCCGATAACGGTTGCACAACTGTTTTTTGGCAAGCTTGCCGCCGGGCTCGACAACGGTTGACCAGCTCATAATCTGCGCCATCACATCAACAGGAAATTTTTTATGACACTGCTGCAATCCTCCTGCCGCGTTGCTTTTGCGGCGCTGCTGCACGATCTGGGCAAATTTCACGAACGCACCGGCCAACCGGTTTCGGGCAATCTCGGCGCACTGACCACGCTGTATCGCTATTCCCACGCCGCGCATACGGCGGATCAATGGGATGTCATCGAGCAACTGGCGCCCGATGTGCTGCGGGGCGATGTCTCCCCCTTCTCCGGACGTGCCAGTGCTGCTGATATTACCGACAGCATGGCCAATGCCGCTGCCGCGCACCACAAACCGGACACAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //