Array 1 8473-9751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUM010000033.1 Riemerella anatipestifer strain 20190103J1-S1 NODE_33_length_11530_cov_282.910067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8473 47 100.0 30 ............................................... ACACTGGACAAGCATGAAGTATGGCACCTT 8550 47 100.0 30 ............................................... AAGTACAATCAAGATGCATCTATATCATTG 8627 47 100.0 30 ............................................... ACACTGGACAAGCATGAAGTATGGCACCTT 8704 47 100.0 30 ............................................... AAGTACAATCAAGATGCATCTATATCATTG 8781 47 100.0 30 ............................................... CAAGCAGAAGCAAAACAGCTCTACTCCAGA 8858 47 100.0 30 ............................................... CAAAAACTCCTGCATGGAAATTCAGAGAAA 8935 47 100.0 30 ............................................... AGAAAGCACTGCTAGTAGCAGGACGGGGCT 9012 47 100.0 30 ............................................... TGGTTTCGACTTCTTCGCACGCTGCTCGAT 9089 47 100.0 30 ............................................... ACTTTATGTAGCATAGATTGAAATTTCTTT 9166 47 100.0 30 ............................................... TTTGAAGCATAAGGGAGCAGACGATAAAAT 9243 47 100.0 30 ............................................... GGACGTATGGTACTTGGAAAGAGGGTACTT 9320 47 100.0 30 ............................................... AAGCAGATAACGGAAGATTTCAACGAGGGT 9397 47 100.0 30 ............................................... TAGAGCAGGTTTTCATTTGTATTACTATCT 9474 47 100.0 30 ............................................... TAACCCACTCCTCTTCGTATTCTTCATTCT 9551 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 9628 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 9705 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 99.5 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 10707-12470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUM010000029.1 Riemerella anatipestifer strain 20190103J1-S1 NODE_29_length_20451_cov_258.408364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================== ================== 10707 35 97.1 30 ...........T....................... CCGAAAAGGGTAAGGCTATGCTATCAGAAA G [10724] 10773 35 94.3 30 ...........T....G.................. CATTCTGTAAACATCTTCAACAAAGATAGC 10839 35 94.3 31 ...........T....G.................. CTAGGCGAGAATGTTTATAAGGAACAAGGTA 10906 35 85.7 80 .....................T.T...T....G.A CTCCGCTGAAACTACAACAAAGCGTGAGCTAACATGAGAGCAGTCCCAACAATTAATCGCTGGATGTTAGGGGTAGCGGA 11022 35 82.9 82 .......G.............TT....T....G.A CTCCGCTGAAAATACAACAAAGCTCGTGAGCTAAAATGAGAGCAGTCCCAACCGAAAATGCGGTATTAAAAGAAGTACAACA 11140 35 85.7 82 .....................CT....T....G.A CTCTGCTGAAAACAACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACTTAAAATGATAGAGGTTATCTACGGCACTA 11258 35 80.0 79 .....T...............TT....T..A.G.A CTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTCGGCATCTTTCAAAATAGGCTGGAAT C [11282] 11375 35 85.7 80 .....................T.T...T..A...A CTCCGCTGAAACTACAACGAAGCTGTGAGTAAACTGAGAGCAGTCCCAACCAGATGTAACGACAGGAAAAAAAGAAATAA 11491 35 85.7 81 .....................TT....T....G.A CTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACCCTCAAACTTCAACTTGTTGCTGGTAACTC 11608 35 82.9 81 .....T...............TT....T....G.A CTCCGCTGAAAATACAACAAAGCTGTGAGCTAAAATGAGAGCAATCCCAACGCATTATCGTACTCTGTAACACGAACGGCA 11725 35 85.7 13 .....................TT....T....G.A CTCCGCTGAAAAT Deletion [11773] 11774 35 68.6 29 A.AAC...GCTGTC.A................... GATTGTCGTTTTAAGTGTGATACCCACAA GAG [11787] 11842 35 100.0 30 ................................... TCTTTTTGAGTATTCATGTTAATTTCATTT 11908 35 100.0 30 ................................... AACTCTGCCACACAAGTTGCACAGCTAGAT 11974 35 100.0 30 ................................... TATTCCTACAAAGGATGTTTTGTCCACAGA 12040 35 100.0 30 ................................... ACAGTGCCCAGATCGTTACACCATTCGTGC 12106 35 100.0 29 ................................... TTTACGATGCTGATATACACGCTTATGGT 12171 35 100.0 30 ................................... GAAAACTTTTTTATGAAGCTAAGAAAGCAA 12237 35 100.0 30 ................................... CTTTCAGAGATGGGACAATGGTTTGTGGAA 12303 35 100.0 30 ................................... TGCTGAAATAGAAAGATTAGGTGTTAATGT 12369 35 94.3 31 ................................C.A CTGGTACTCCAGTTAGTTTTTCAGCTTCTGC 12435 35 77.1 0 .....................T.T...T.AT.GTT | C [12456] ========== ====== ====== ====== =================================== ================================================================================== ================== 22 35 90.9 46 GTTGTGAATACCCTTCAAATGAGAGCAGTCCCAAC # Left flank : AAGGCACTTATATTAAAATAGACGGCAATGACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGCACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTACATTAAGGAAGGGCAGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGCCTCTTCTCTCGGTAAGACGAAGTCGGTTCCCTCGTACGAGGGAACCGACTTCGTCTGTATTAAGGAAGTGAGGAATTTTCTGTAATAGAATAAATAATATAGCAAAAATCCCTGCTCTGCAGGGATTTTTTTTATGCCCTTAGGT # Right flank : TATGATAGGGTATTGTCTTTTTTGGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGCTAATATAATGAATTTTATGCTTTTGCCCTTTGGAAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCTTCGTATTTTTGGCGTTCAATGTTGCCCTTAAGCTC # Questionable array : NO Score: 4.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.21, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //