Array 1 275914-274437 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNL01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM1182::KO_STM3664 BCW_7521_1__paired__contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 275913 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 275852 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 275791 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 275730 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 275668 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 275607 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 275546 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 275485 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 275424 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 275363 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 275302 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 275241 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 275180 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 275119 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 275058 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 274997 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 274935 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 274832 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 274771 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 274710 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 274649 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 274588 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 274527 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 274466 29 96.6 0 A............................ | A [274439] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 294027-292046 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNL01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM1182::KO_STM3664 BCW_7521_1__paired__contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 294026 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 293965 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 293904 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 293843 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 293782 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 293721 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 293660 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 293599 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 293538 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 293477 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 293416 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 293355 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 293294 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 293233 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 293172 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 293111 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 293050 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 292989 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 292928 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 292867 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 292806 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 292745 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 292684 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 292623 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 292561 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 292500 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 292439 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 292378 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 292317 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 292256 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 292195 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 292134 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 292073 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //