Array 1 32327-32493 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830576.1 Neisseria sp. HMSC061H08 Scaffold251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 32327 34 88.2 33 NNN..............................A AAACCGCTATGTCGATGATTTCAGACGGCCTGC 32394 34 100.0 32 .................................. CGAAGCCTTGAACGTTATTTTTGGCGGTTTCT 32460 34 97.1 0 .................................T | ========== ====== ====== ====== ================================== ================================= ================== 3 34 95.1 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Left flank : AGTGTTTGAATGCGACATCGCGCCCGATCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAATGGCGGCGCAAAGTGGAACACCATGGCGCAAAACCGTCGGTGGATGTGTTTAAGGATACCTTGATTGTGTGAATCGCCAACCTGAGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTTGGATTGTTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTCGGGAGCTTAGCGAAATCGGGGCTATGAAACCTGACAGAGCAAGGCTTTTGAGAGGGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTATGGAAGTTGGCGGTGCTTAACATAGGTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGATGGCCATACAATCCAAGACATGCACGTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTATCGCATATCCTTTTATCTTTCGTGGATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGATTTGGCAAAAAAAGTAGATAAAGAATGGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCG # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 32716-32879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830576.1 Neisseria sp. HMSC061H08 Scaffold251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 32716 33 97.0 33 T................................ TGCTATCGCATATCCTTTTATCTTTCGTGGATT 32782 33 100.0 32 ................................. AGATTTGGCAAAAAAAGTAGATAAAGAATGGG 32847 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ================================= ================== 3 33 97.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAACCGCTATGTCGATGATTTCAGACGGCCTGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGAAGCCTTGAACGTTATTTTTGGCGGTTTCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTATGGAAGTTGGCGGTGCTTAACATAGGTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGATGGCCATACAATCCAAGACATGCACGTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGCGAGCCAAGAGAGGACGGCGGACTTGATATAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTATCGCATATCCTTTTATCTTTCGTGGATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTTTTGGCGTTGCCATAGTTTTTTAAAAAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACTGGAGTCCGAAAGACTACCCTGGCAATATCTCCAGCCGCCTTCG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 32975-33140 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830576.1 Neisseria sp. HMSC061H08 Scaffold251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 32975 33 90.9 34 NNN.............................. AAGCGAGCCAAGAGAGGACGGCGGACTTGATATA 33042 33 97.0 33 G................................ TGCTATCGCATATCCTTTTATCTTTCGTGGATT 33108 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 96.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCGGCTGTGTGTTGAAACTTTATGGAAGTTGGCGGTGCTTAACATAGGTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGATGGCCATACAATCCAAGACATGCACGTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTATCGCATATCCTTTTATCTTTCGTGGATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGATTTGGCAAAAAAAGTAGATAAAGAATGGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGTTTTGGCGTTGCCATAGTTTTTTAAAAAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACTGGAGTCCGAAAGACTACCCTGGCAATATCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACAAATGGCGTAGGGTTTGCATCAATAGAAGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATGGATTGAATTGAGGAGGAGAAATTGCAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 33300-33532 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830576.1 Neisseria sp. HMSC061H08 Scaffold251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 33300 35 91.4 31 NNN................................ TGGAGTCCGAAAGACTACCCTGGCAATATCT 33366 35 100.0 31 ................................... AAATGGCGTAGGGTTTGCATCAATAGAAGGG 33432 35 91.4 31 ................................ATG GATTGAATTGAGGAGGAGAAATTGCAAACAA 33498 35 85.7 0 ..............................NNNNN | ========== ====== ====== ====== =================================== =============================== ================== 4 35 92.1 31 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAC # Left flank : GCTGTGTGTTGAAACAGATTTGGCAAAAAAAGTAGATAAAGAATGGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGCGAGCCAAGAGAGGACGGCGGACTTGATATAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTATCGCATATCCTTTTATCTTTCGTGGATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTTTTGGCGTTGCCATAGTTTTTTAAAAAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGACGGCATGAGCAGCCTCAAAAACTGGGTAAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGAACCTTTTTCCTGCAATTTCTCACAAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAAAATTAGATTCTATGCTTTATGCCTTGTTATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTCAAGCAGTTTGCCGATTGTCTTGGCTTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACAAATGGCGTAGGGTTTGCATCAATAGAAGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTTATCAAGTCTGCTCATTTTCTTACTCCCAGCCCAGCCGC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 33624-34308 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830576.1 Neisseria sp. HMSC061H08 Scaffold251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 33624 33 87.9 34 NNNN............................. AGACGGCATGAGCAGCCTCAAAAACTGGGTAAAA 33691 33 100.0 32 ................................. TGTTGAACCTTTTTCCTGCAATTTCTCACAAA 33756 33 97.0 35 T................................ AGAAAATTAGATTCTATGCTTTATGCCTTGTTATG 33824 33 97.0 33 A................................ TCGTCAAGCAGTTTGCCGATTGTCTTGGCTTTT 33890 33 100.0 33 ................................. TACAAATGGCGTAGGGTTTGCATCAATAGAAGG 33956 33 100.0 34 ................................. ACTTTATCAAGTCTGCTCATTTTCTTACTCCCAG 34023 33 97.0 33 C................................ TGTGATTAAAACAAACATCAGCAAAAACATTAT 34089 33 97.0 33 C................................ GCCACGTGGCAGGCGGGCAGGAAATAAAAGCCT 34155 33 97.0 20 T................................ AACGAAGCAGAATTTAAAGG Deletion [34209] 34208 32 78.8 34 CA....G.TG..-..C................. TCCAGCAACTACGAATTCTATGCAGACCTATTCC TG [34224] 34276 33 72.7 0 .T.....A...GAA..T......A....C...T | ========== ====== ====== ====== ================================= =================================== ================== 11 33 93.1 32 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGCTGTGTGTTGAAACCGTTTTGGCGTTGCCATAGTTTTTTAAAAAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACTGGAGTCCGAAAGACTACCCTGGCAATATCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACAAATGGCGTAGGGTTTGCATCAATAGAAGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATGGATTGAATTGAGGAGGAGAAATTGCAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TATCGTCCAAGCAGGCCACTTTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGATTAATAAATGACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATGTTAAATTTAATATCATATTATCATTGCATGATATCAGTCTGAATTTTTTAGAATTTCAATATGAAACCTCTAATTTACTACGCTCATTCCGCGCAAGACGAACTCGGTAATCTCTTACCTTACGAACATTGGCAAACCTTGCAAAGCCATTCGGTCAATGTTGGGGAAATGGCGGCGGAGTTTGCTCGGGTATTTGGTGCGCAGGAACAGGCCTGCCAGACAGGACAGCTTCATGACTTAGGGAAATATTCGGAACCATTTGACCGCCGATTGCATGGTGGCCCATCAGTCGATTATGCTACCGCTGGAGTGAAAATTGCAAAAATGCTTGCTTTATAGTGGAGGTCAGAG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14099-14266 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830559.1 Neisseria sp. HMSC061H08 Scaffold117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14099 36 83.3 30 T...G.TAG.T......................... TGCCGAAAGGCAAAGGGATACGCGCCGAAT 14165 36 100.0 30 .................................... ACTAACAACTTATTTGAGCAGGCATTAATA 14231 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTA # Right flank : TACTTCAACGGAAAACCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAAGCAGTCTTAAAATAATAATAGCTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTGGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTTAATGGCAAGATTTCAGGCAGCTTCAGCTGTTTGGCATTTTTGTTAGTTACGCTGACTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //