Array 1 37055-36423 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 37054 36 100.0 31 .................................... TTAAAACACAAAACAACCCCCCTAATTCATA 36987 36 100.0 30 .................................... TGCCCTAACACCCATTGTCCTACATACCCT 36921 36 100.0 31 .................................... TTAAAACACAAAACAACCCCCCTAATCCATA 36854 36 100.0 30 .................................... TTTGAACTTGCCTTTTGAGCAAACAAATTT 36788 36 100.0 30 .................................... TGCCCTAACACCCATTGTCCTACATACCCT 36722 36 100.0 30 .................................... TACTGGCAATAAAAGAAGTTGATAGAACAT 36656 36 100.0 30 .................................... ATAACCAGTATTATATAACCGGAGAAGCTG 36590 36 97.2 30 ........C........................... ATAACCAGTATTATATAACCGGAGAAGCTG 36524 36 100.0 30 .................................... ATAACCCGTATTATATAACCGGAGAAGCTG 36458 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.4 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAATTTCTTACTAGAGTAAAACTTAAAACACAAAACAACCCCCCTAATTCATA # Right flank : AAAAGGTAAACATTATTATTTGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGCTGTACAATTTCTTACTAGAGTAAAATAGAAGTAATTCCGATATAACAACCGGGCAGTTTTTGTGTTGTACAATTTCTTACTAGAGTAAAATAGAAGTAATTCCGATATAACAACCGGGCAGTTTTTGTGTTGTACAATTTCTTACTAGAGTAAAACAACCGAATACACATTTGATCCGAAGATCATGTTTTTGTGCTATACATTTTCTTACTAGAGTAAAACTTTACTATCATTATTCTGAAAATGAGTTTTAGTTCTTGTGCTATACATTTTCTTACTAGAGTAAAACTTTACTATCATTATTCTGAAAATGAGTTTTAGTTTTTGTGCTATACATTTTCTTACTAGAGTAAAACTTTACTATCATTATTCTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : GTTTTTGTCCTGTACAATTTCTTACTAGAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 39097-37674 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39096 36 100.0 30 .................................... ACTAAAATTGAAGAAATTTACCTAGCAAGT 39030 36 100.0 30 .................................... TCGTCAACGAAAACTACCTCATAGTCATTA 38964 36 97.2 30 .......G............................ AAAGGCGACATACATTTTGATCTTGCATAT 38898 36 100.0 29 .................................... ACCAAAAAAATTTTAACACACAAAAGACT 38833 36 100.0 30 .................................... CAAAACCTTGAAGTTTATGAAATCTAATCA 38767 36 100.0 30 .................................... GTGTATATTTGTTATGCCAGTTTGTTTGAA 38701 36 100.0 30 .................................... GTGTATATTTGTTATGCCAGTTTGTTTGAA 38635 36 100.0 30 .................................... CTTTAAATTCCTTTGGCAAAGCGTAGCCAT 38569 36 100.0 30 .................................... ATATAATAATTGATTTAACAACACTGTTAA 38503 36 100.0 30 .................................... ATATAATAATCGATTTAACAACACTGTTAA 38437 36 97.2 30 ....C............................... GTATTTGGGGAGATAATAAGGTAGTTAGTG 38371 36 100.0 31 .................................... TTAAAAGGAATCTCAGTAATGTATTCATTTA 38304 36 97.2 31 ........C........................... TTAAAAGGAATTTCAGTAATGTATTCATTTA 38237 36 100.0 30 .................................... ATAAGTAGCAAAATCGACTATATTATCTTC 38171 36 97.2 30 .................................T.. TGGTTTTATCTAAATTACTCAAGAGTTGCT 38105 36 97.2 30 ......A............................. TGGTTTTATCTAAATTACTCAAGAGTTGCT 38039 36 100.0 30 .................................... TGGTTTTATCTAAATTACTCAAGAGTTGCT 37973 36 97.2 30 ......A............................. AACGACTTACAAATCAGCTGAGCATGTAAT 37907 36 100.0 30 .................................... AACGACTTACAAATCAGCTGAGCATGTAAT 37841 36 100.0 30 .................................... TCTTGTTTTTTCCTGGACAAATACCTCTTT 37775 36 100.0 30 .................................... TCTTGTTTTTTCCTGGACAAATACCTCTTC 37709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.2 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : GTAAACTTTGAAAATATACTCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAATTTAATTCGAAAAATTAACTCCGAAAAGTGTTTGTGCTGTACAATTTCTTACTAGAGTAAAACATTTTCGGGAAAGTCCGAGTCTTGATAACAGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACAAATTGCCCGGAGAGGTAAAAAATTTGTCTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACTATAAATTAGTAAACTTTGAAAATATACTCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACTTTTCTTGTTTAGTATAAAATAAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACAATTTCTTACTAGAGTAAAACTCGTCAAAGAAAACTACCTCATAGTCATTA # Right flank : TTGTTATTATTACCTCTAAACCTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 39774-39276 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39773 36 100.0 30 .................................... CAATTTAATTCGAAAAATTAACTCCGAAAA 39707 36 100.0 30 .................................... CAATTTAATTCGAAAAATTAACTCCGAAAA 39641 36 97.2 30 ..G................................. TATAAATTAGTAAACTTTGAAAATATACTC 39575 36 100.0 30 .................................... CAATTTAATTCGAAAAATTAACTCCGAAAA 39509 36 97.2 30 ..G................................. ATTTTCGGGAAAGTCCGAGTCTTGATAACA 39443 36 100.0 30 .................................... AAATTGCCCGGAGAGGTAAAAAATTTGTCT 39377 36 100.0 30 .................................... TATAAATTAGTAAACTTTGAAAATATACTC 39311 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : ATCAGGAAATGTAGACAAGAGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCGGATTTAGTAAAAAAAGGACTCTAATATCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCGGATTTAGTAAAAAAAGGACTCAAATATCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACATTTACTAATAAAAGTTAAAGGGTATATTGGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCCCCCACTCCTTACTTACCACTACCCGACCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCCCCCACTCCTTACTTACCACTACCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGTACAATTTCTTACTAGAGTAAAACACAATTTTGTCAATAACTTTTATTAATTCCT # Right flank : TTTTCTTGTTTAGTATAAAATAAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACAATTTCTTACTAGAGTAAAACTCGTCAAAGAAAACTACCTCATAGTCATTAGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACACTAAAATTGAAGAAATTTACCTAGCAAGTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACTCGTCAACGAAAACTACCTCATAGTCATTAGTTTTTGGGCTGTACAATTTCTTACTAGAGTAAAACAAAGGCGACATACATTTTGATCTTGCATATGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACACCAAAAAAATTTTAACACACAAAAGACTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAAAACCTTGAAGTTTATGAAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : GTGTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 4 40585-39954 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 40584 36 100.0 30 .................................... TATATTTTAGATCATGAAGAAGCCGATCCC 40518 36 100.0 31 .................................... ATCTTAGAAACTTTTTTAAAGACGTATTTGG 40451 36 100.0 30 .................................... TATATTTTAGATCATGAAGAAGCAGATCCC 40385 36 100.0 30 .................................... TATATTTTAGATCATGAAGAAGCAGTTCCC 40319 36 100.0 30 .................................... AAAAATTTAGATCAGGAAATGTAGACAAGA 40253 36 100.0 30 .................................... CGGATTTAGTAAAAAAAGGACTCTAATATC 40187 36 100.0 30 .................................... CGGATTTAGTAAAAAAAGGACTCAAATATC 40121 36 100.0 30 .................................... ATTTACTAATAAAAGTTAAAGGGTATATTG 40055 36 100.0 30 .................................... CCCCCACTCCTTACTTACCACTACCCGACC 39989 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : CATTTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACTGAAACTTACTAATCGCTTTTGCTTGTGCGCGTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACAATTTTATAAGGTTTATAATCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTACAATTTCTTACTAGAGTAAAACAAATGCTCACATTGAAAAAGGCAGAGAATA # Right flank : CCCCCACTCCTTACTTACCACTACCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGTACAATTTCTTACTAGAGTAAAACACAATTTTGTCAATAACTTTTATTAATTCCTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAATTTAATTCGAAAAATTAACTCCGAAAAGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAATTTAATTCGAAAAATTAACTCCGAAAAGTGTTTGTGCTGTACAATTTCTTACTAGAGTAAAACTATAAATTAGTAAACTTTGAAAATATACTCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAATTTAATTCGAAAAATTAACTCCGAAAAGTGTTTGTGCTGTACAATTTCTTACTAGAGTAAAACATTTTCGGGAAAGTCCGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 5 41874-40978 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 41873 36 100.0 30 .................................... CAAAAATTCCTTGACATAGAGAACCATTTT 41807 36 97.2 30 .....A.............................. CGTATGAAGATAAACCTATGCTTTATTTAC 41741 36 100.0 30 .................................... CAAAAATTCCTTGACATAGAGAACCATTTT 41675 36 97.2 30 .....A.............................. ATTTTTGCTTCACAATTCACAACATCCGGT 41609 36 100.0 30 .................................... ATTTTTGCTTCACAATTCACAACATCCGGT 41543 36 97.2 30 .G.................................. TAAATTTTGGGTTTTTGGTTATTTCTAATT 41477 36 100.0 31 .................................... GTTTAAAGGCATTTGTATAATTACTTTGTAT 41410 36 100.0 30 .................................... CTAAATACTCAATACCGTTTTTAAAATTTA 41344 36 100.0 30 .................................... CTAAATACTCAGTACCGTTTTTAAAATTTA 41278 36 100.0 30 .................................... CTAATTACTCAGTACCGTTTTTAAAATTTA 41212 36 97.2 31 .A.................................. TGAAAATTACTAATCGCTTTTGCTTGTGCGC 41145 36 100.0 30 .................................... CGTGTACAATTTTACTCTCGGTGAGCATTT 41079 36 100.0 30 .................................... TGAAACTTACTAATCGCTTTTGCTTGTGCG 41013 36 94.4 0 CG.................................. | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 98.8 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : NNNNNNNNNNNNNNNNNNCTGTACAATTTCTTACTAGAGTAAAACCAAATTTTAGAACATAAAGAGAGTTTTGTTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCGGAAAAGGGTAAGGTATTATTACAGCAGGGTTTTTATGCTGTACAATTTCTTACTAGAGTAAAACCGGAAAAGGGTATGGTATTATTACAGCAGGGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACAATTTTATCCGTTTTAGAATCGATGTCCAAGTTTTTGTGCCGTACAATTTCTTACTAGAGTAAAACAATTTTATCCGTTTTATAATCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACAATTTCTTACTAGAGTAAAACCAAAAATTCCTTGACATAGAGAACCATTTT # Right flank : AATTTTATAAGGTTTATAATCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTACAATTTCTTACTAGAGTAAAACAAATGCTCACATTGAAAAAGGCAGAGAATAGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACTATATTTTAGATCATGAAGAAGCCGATCCCGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACATCTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 6 42299-42065 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42298 36 100.0 30 .................................... CGGAAAAGGGTAAGGTATTATTACAGCAGG 42232 36 97.2 30 ......A............................. CGGAAAAGGGTATGGTATTATTACAGCAGG 42166 36 100.0 30 .................................... AATTTTATCCGTTTTAGAATCGATGTCCAA 42100 36 97.2 0 ..........C......................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : ACTAGAGTAAAACTTCTTGCCCCTTTCTTTTTGTCTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTACAATTTCTTACTAGAGTAAAACCAAATTTTAGAACATAAAGAGAGTTTTGTT # Right flank : AATTTTATCCGTTTTATAATCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACAATTTCTTACTAGAGTAAAACCAAAAATTCCTTGACATAGAGAACCATTTTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAAAAATTCCTTGACATAGAGAACCATTTTGTTTTAGTGCTGTACAATTTCTTACTAGAGTAAAACCGTATGAAGATAAACCTATGCTTTATTTACGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACCAAAAATTCCTTGACATAGAGAACCATTTTGTTTTAGTGCTGTACAATTTCTTACTAGAGTAAAACATTTTTGCTTCACAATTCACAACATCCGGTGTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAACATTTTTGCT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 7 43153-42786 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765984.1 Mycoplasma ovipneumoniae strain TC8 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43152 36 100.0 30 .................................... GACTAAAATAAGAAATATTGAGAGTTCAAT 43086 36 97.2 30 .....C.............................. CCCAATCATTAAGACACAAACTAATGGTTA 43020 36 100.0 30 .................................... CCCAATCATTAAGACACAAACTACTGGTTA 42954 36 100.0 31 .................................... GAAATATTCAAAAACCCAAAATCCCCACCCT 42887 36 100.0 30 .................................... TTCTTGCCCCTTTCTTTTTGTCTTTGGATA 42821 36 97.2 0 ....G............................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 99.1 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : TTACAAAATAAAAAAAAGTTTTTTAAACTAAAAACGTTTTTATAATTGATTTTTTAGTTTAAAAATTTGAAAAAATACCTTTTTTTCTTGGAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGTACAATTTCTTACTAGAGTAAAACGACTAAAATAAGAAATATTGAGAGTTCAAT # Right flank : TTCTTGCCCCTTTCTTTTTGTCTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTACAATTTCTTACTAGAGTAAAACCAAATTTTAGAACATAAAGAGAGTTTTGTTGTTTTTGTGCTGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //