Array 1 279279-283214 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGJ01000004.1 Klebsiella quasivariicola strain VRCO0126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279279 29 100.0 32 ............................. CGGCACTGATAAGGAGACTGCAGCGTCTGGCT 279340 29 100.0 32 ............................. CAACGTCGAACGCTTTCGTTAAATCCTCAAAG 279401 29 100.0 32 ............................. TCTCCACTCATATTGCAACCAACATTTACAGA 279462 29 100.0 32 ............................. AGTATCTTAACGGCCTTTATCAGCCACCAGAT 279523 29 100.0 33 ............................. GTGTTCGCCTCCCGGCGTGCGATATCCATCCAC 279585 29 100.0 32 ............................. TCCGGGCATTCGTCGAGAAGACGAAAAAGAAT 279646 29 100.0 32 ............................. GTATAAAGACGCCGAAGGCTATTAGCGGGAAT 279707 29 100.0 32 ............................. CGTAGCCTCCATCTGGTCGTAAATCTTGCGGG 279768 29 100.0 32 ............................. ATATTTTTTACCGGGATCTCGATACCCCAGCA 279829 29 100.0 32 ............................. TCCAGCCCTTCCGGTGTGATGTCCCACTCTGA 279890 29 100.0 32 ............................. GGTAACCGGGTCGTCGTCCAGGTCCTCGTCGG 279951 29 100.0 32 ............................. GTTGTGATAGAAACACCTTTTGTTAATGGGGA 280012 29 100.0 32 ............................. GTAGCGATGTGCTGGCGCAACTCCGGCAGCTT 280073 29 100.0 32 ............................. CTGTTTCATCCGCGCATTGACACGGAGCTGCA 280134 29 100.0 32 ............................. CGCCTCTAAATATTATAGTATCGCAGACGTCA 280195 29 100.0 32 ............................. GTCACTGGCCGCGCTATTTCCGGGGGTAAGCT 280256 29 100.0 32 ............................. GCGATCTCTTTTGTGCGGGGCGCCGACGCTGC 280317 29 100.0 33 ............................. TATCGGGCGGACCAGGCCACCCCCGTCGCCCGC 280379 29 100.0 32 ............................. TGTACCGCGTCAAGCCCGTTTTCGCGAATATC 280440 29 100.0 32 ............................. GTCGAAAGCCCGAATGGCGATATCGACGCTAT 280501 29 100.0 32 ............................. CCGGGATGACAAGTTCCGGCCCATTGAACCCG 280562 29 100.0 32 ............................. GAAGCTGAAGATATAGCAGTCGACGGGGCTGT 280623 29 100.0 32 ............................. CCGTGATCATCTCCCGCGGGGAAATGGTCGGA 280684 29 100.0 32 ............................. AGCAATAGCAATGGCCTGCGCCTTAATTAACG 280745 29 100.0 32 ............................. CCATTTTTAGTAGCAATAACCTGCAATGACAG 280806 29 100.0 32 ............................. AGTTTGTTCGTCGCATTAATGGCGTGAACGTT 280867 29 100.0 32 ............................. AATGCGCCGGCCGAGGTGCTGGTGCGCGAGGT 280928 29 96.6 32 ............................A CCGTTATCAGCCAGGATACCAGGTTCTCACGC 280989 29 100.0 32 ............................. GCAGATCACCAGCCTACAGGCCATCTTCCAGA 281050 29 100.0 32 ............................. CAGGCGGGGCAACCTCGACGCAGCGCGCCGGA 281111 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCGGGCCAGTT 281172 29 100.0 32 ............................. GCGGGCATCTCTCGTGCCGGTCGCACCGCGCC 281233 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 281294 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 281355 29 100.0 32 ............................. CCTCGTCTCCAACCGGCTGCTCGTTGAAGTTG 281416 29 96.6 32 ............T................ GATCAGATGTACCCCATCTTCAGTTGGGGATG 281477 29 100.0 32 ............................. AGTCAAGACCGGTACCGCGGCGGATATCCTGA 281538 29 100.0 32 ............................. GCGGTTACGTTGTGCTGGATATCTCCCTGAAA 281599 29 100.0 32 ............................. AGGGGCTGACACGTGCCGGCCAACTGTCCCCC 281660 29 100.0 32 ............................. GATGAAATTTAGGTGCGCACCACTTTTCATAT 281721 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 281782 29 100.0 32 ............................. GCAAAAGATGACTGGTTAATGTCACCGCGCAT 281843 29 100.0 32 ............................. CCACGGTGTCAGCGTGCAACTCGTCGTGATGC 281904 29 96.6 33 .............A............... CGCATGCAGAAAACCGCGACGCGACTTTTAGGC 281966 29 100.0 32 ............................. TAATCAAACGACGCATTACCGGGGTTTCAGAA 282027 29 100.0 32 ............................. CAGGCGCTGCAGAAAATGTACCAGGACGATCT 282088 29 100.0 32 ............................. CAAATGATTCGCGCGACTAAAGTTGCAGCCCG 282149 29 100.0 32 ............................. AAAAAACTGGTCTTGAAGGGCTTGACCCGAAA 282210 29 100.0 32 ............................. TCGCCGTACCAGAAGGATATTTGTTTTAATCT 282271 29 100.0 32 ............................. GTTCGCACTGTTATCCAATCGTGGAGGAAATT 282332 29 100.0 32 ............................. TTAGTAAACGTTGCACCCATGCGGCCAAGTGT 282393 29 100.0 32 ............................. GCGTGGTGCCGAGCAGCATCATCCCATATAAA 282454 29 100.0 32 ............................. GAATTTGCATGAATACCGGATCCGCTCTCGCA 282515 29 100.0 32 ............................. GCTCAAATAACAGACGAACGTTTGGCAAAAAT 282576 29 100.0 32 ............................. TCAATACATTTGAAGCTGCTTTTGCTCCTTTT 282637 29 100.0 32 ............................. CGCTCTAAATTTTGGGCTTCTGGATATGATGT 282698 29 100.0 32 ............................. GTTCACGATCTCTTTGTCGGCTTCCTCGATAA 282759 29 100.0 32 ............................. AAATCATCAACGGCTCCAACACGACCGTTAAC 282820 29 100.0 32 ............................. ATTTCCATTCGCCCCGGTGTTGCTTGCACAGT 282881 29 100.0 32 ............................. TGGCACGGCAACCGCGAAACCGTGGGTTTTCG 282942 29 100.0 32 ............................. AATACAACGACGTCCTGACGGATAAAGGGATG 283003 29 100.0 32 ............................. GAATGGTCACAATTCAAGGGGGTGCTGGCGCT 283064 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 283125 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 283186 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : TGCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAACGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 380410-381046 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGJ01000001.1 Klebsiella quasivariicola strain VRCO0126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 380410 28 100.0 33 ............................ CGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 380471 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 380532 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 380594 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 380655 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 380716 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 380777 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 380838 28 96.4 33 ......................A..... TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 380899 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 380960 27 92.9 33 .............A...-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 381020 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCACCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 389708-390772 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGJ01000001.1 Klebsiella quasivariicola strain VRCO0126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 389708 28 100.0 33 ............................ TCTTTCAGGCGGCGGCGCTCCCGCTGCAGGTAG 389769 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 389830 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 389891 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 389952 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 390013 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 390074 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 390135 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 390196 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 390257 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 390318 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 390379 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 390440 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 390501 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 390562 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 390623 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 390684 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 390745 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATATAAAGAACGACTCTGTATCGATCTGGCTTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTTATTGCCGCCGATATCAATGAGCTAATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAAGATTCGGTTGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //