Array 1 369-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTL01000014.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50261 50261_c14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 368 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 307 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 246 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 185 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 124 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTL01000012.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50261 50261_c12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 96 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 157 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 218 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 279 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 340 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 401 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 462 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 523 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 584 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 645 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 706 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 767 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 828 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 889 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 950 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGCCGTCGCCGTCGCCATATCCGGCGCTGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17601-21474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTL01000012.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50261 50261_c12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17601 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 17662 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 17723 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 17784 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 17845 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 17906 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 17967 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 18028 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 18089 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 18150 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 18211 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 18272 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 18333 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 18394 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 18455 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 18516 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 18577 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 18638 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 18699 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 18760 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 18821 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 18882 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 18943 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 19004 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 19065 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 19126 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 19187 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 19248 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 19309 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 19370 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 19431 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 19492 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 19553 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 19614 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 19675 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 19736 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 19797 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 19858 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 19919 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 19980 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 20041 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 20102 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 20163 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 20224 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 20285 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 20346 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 20407 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 20468 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 20529 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 20590 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 20651 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 20712 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 20773 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 20834 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 20895 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 20956 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 21017 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 21078 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 21139 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 21200 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 21261 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 21322 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 21384 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 21445 29 96.6 0 ............T................ | A [21472] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //