Array 1 1155826-1154956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNF010000007.1 Listeria monocytogenes strain J0099 NODE_1_length_1450299_cov_52.258_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1155825 29 93.1 35 ..........T...T.............. GACATTAATTTTATTGCTTTATCACTGAACTCAGC 1155761 29 93.1 37 ..........T...T.............. GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC 1155695 29 96.6 36 ..............T.............. TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 1155630 29 100.0 37 ............................. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 1155564 29 93.1 35 ..............T...A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 1155500 29 93.1 36 A..............C............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 1155435 29 93.1 35 ..........A...T.............. ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT 1155371 29 93.1 36 .........G....T.............. AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 1155306 29 100.0 34 ............................. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 1155243 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 1155178 29 93.1 36 ..........A...T.............. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 1155113 29 96.6 36 ..............T.............. AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 1155048 29 100.0 35 ............................. GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 1154984 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 94.6 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 488542-489504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNF010000001.1 Listeria monocytogenes strain J0099 NODE_3_length_494877_cov_63.0623_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 488542 36 100.0 30 .................................... GATTTACTAGAACACAAAATTACAAAGTGA 488608 36 100.0 30 .................................... TAGTTGCCATCGTAGTAATAAAACGCTTAG 488674 36 100.0 30 .................................... TTGGACTACGGACTTTTCTAGTTCGGACTG 488740 36 100.0 30 .................................... TTTTAATAGAAATGCGTGGCACTGTGGCGA 488806 36 100.0 30 .................................... CCCTGCAAATCAGAATTAAACTGAATAGCG 488872 36 100.0 30 .................................... ACTGGACGGGGCATTAATTGCACTGTAACG 488938 36 100.0 30 .................................... TAAGACTGGTATACCAAAGTCAACGCTTTC 489004 36 100.0 30 .................................... TCTTAACACGGATTATTTATTAACGGTACT 489070 36 100.0 30 .................................... AACCTCTGATGTAGCTTGTTTTTAACTGTT 489136 36 100.0 30 .................................... TAAATTCATACCCTTAACCAGTTTGATCCT 489202 36 100.0 30 .................................... TTGTTGCTTTGATCCAATCGTCACCATGAA 489268 36 100.0 30 .................................... GCTATTGTTGTCTGCGAGCGCCGTTGTGGT 489334 36 100.0 30 .................................... TGCGATGAGAGAAGCTTTTCCGGATAACTT 489400 36 100.0 30 .................................... CGAAAGTGATTTTGGTATCTCTGACAGTGG 489466 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [489491,489497,489500] ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATTTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTAAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //