Array 1 12128-12763 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJDU01000024.1 Brachyspira catarrhinii strain Z12 Contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 12128 31 100.0 36 ............................... TCAATTTTTATATAGCCACTTTCGGATACGCTCTCC 12195 31 100.0 37 ............................... CTCGAGACAGTTTTTTCAGAATATAGTTTTAACGATA 12263 31 100.0 36 ............................... GATTTTGCTTCAAATCCTTTCACGAGCTGCAGAATA 12330 31 100.0 36 ............................... CACTACTAATAAAACCGCATGATATATTTTAAACGC 12397 31 100.0 36 ............................... AGCAAGAGCGAGATAGAAAAAATTATCGAAAATATA 12464 31 100.0 35 ............................... CTTTTTGTGTTAAATAGCTTTCTATCATGTTAGAT 12530 31 100.0 36 ............................... TAAAAATTGACTTCTTTCTAAACTATCGTCAACTAC 12597 31 100.0 37 ............................... AAAGGAGGAAGTGAGTTTGACTATATGATAGTCCAAA 12665 31 100.0 37 ............................... TATCAAATTTTAACAACTCCTCAAGATTCAAATGATA 12733 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 10 31 100.0 36 ATAATAAATCTAACCATAGTGGAATGTAAAT # Left flank : TTTACTAGGCGAAAAAGAATATTCTCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATGTATGATATAGAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTCGAGGGCGAGGTTTCCGAAGCCCAATACCTCAAATTAAAAAAAGAGCTCTTTGACATATTAAGAGAAAATAAAGATTCTTGCATAGTTTTCAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTGGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACGAGTATGTCGATATATAATGAATAATATTTTACGGCTTATCGACAGACAAGTTTTTTGAAATAGGTTCGTATTTTGTAATGTTATATATTTTTTATATCGACTTACTCCAAATTTAATATGTAAAAGATTTTGTCTTTTCATATTTCATGCCGAAAAAACGG # Right flank : TTCGTAAAATGGAGTCGAGGATTAGGCAAGGACTGGATAATAAATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 115-1686 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJDU01000441.1 Brachyspira catarrhinii strain Z12 Contig_442, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 115 31 100.0 36 ............................... ATGAAGGAATTATGTTAAAGATAAAATTGCAAATAG 182 31 100.0 36 ............................... GTCGTTGTCTTTTTTATTTGCATTTCGTTTTTTAGC 249 31 100.0 36 ............................... ACACAATTAAAAAGATTATTCTAACGCCAGAAATAG 316 31 100.0 36 ............................... TTGAATAACAATATTTTAAATGTAAAAATGCAGGGT 383 31 100.0 36 ............................... TGATTGTCGTTTTCGCTTACTTTAGTCGCTGTATGC 450 31 100.0 37 ............................... TTCGAAGGAAGTGAAAATATTTTCGGATGTAGTAAAT 518 31 100.0 36 ............................... TTTTTGATTAAAATAATAATTTGATATAGGTAAATG 585 31 100.0 38 ............................... TTTCAAAAGATTATCCAACTTTTTACTGTTATTCTCTA 654 31 100.0 36 ............................... GCAAATCTGAACTTATAGTACCAAAAAATACGGATA 721 31 100.0 35 ............................... TTTCTATTTTCTAGACAATTTAGACATTTTCCACA 787 31 100.0 36 ............................... TTTATAATTTACCATTGCTTCAGCTTTATAATACAA 854 31 100.0 36 ............................... TAGAAACAAGAGAAAAAATCTACCAAACATTTAAGG 921 31 100.0 36 ............................... TGGAAGCCGAAACTAAACGGCGTAATTTGGAGTTTA 988 31 100.0 36 ............................... CATTCTATAGAAGTCTACTTGACATGAATCTTCGTC 1055 31 100.0 36 ............................... AGAAAGAGAATCTAATTCTAATATTAGTCGTAATTC 1122 31 100.0 36 ............................... AGAAGGCAAGCTGTTGGGCAAGAAATATTAAATGAT 1189 31 100.0 34 ............................... TAGCTATTGAAGCGTTTCATACGATTAATGCTAT 1254 31 100.0 36 ............................... CCAAGCTGAATCTAAGTTTTCTTTCATTCTTTTGAA 1321 31 100.0 36 ............................... AAGAATACGAGACGCAAGAGCTGTAAGTTATACTGC 1388 31 100.0 36 ............................... ACCTATCTCTAAGAATAACGGGTTAACGATAACCGA 1455 31 100.0 36 ............................... AGCAGATGGCAGTGGTTTGGACGAGGATTTGAATAC 1522 31 100.0 36 ............................... GCAGTCGCTCGCTGCAATATCTTATGAAATAAATCG 1589 31 100.0 36 ............................... GGAGCAGTAAAATTAGAAGTTGTAGAATTTAAAGAA 1656 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 24 31 100.0 36 ATTTACATTCCACTATGGTTAGATTTATTAT # Left flank : ATTATTCTATTTGTTTATTAAAAATCTATTCAAATTCTTTTTTGAATTTATTAGATTTCAGTTTGCAAAAAGCGTTTATTTATTTAAATGTTTTTTAAAAACTTCTTTATTAGGA # Right flank : CGATAACGATAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTATGGTTAGATTTATTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 60-1163 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJDU01000544.1 Brachyspira catarrhinii strain Z12 Contig_547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 60 31 100.0 35 ............................... AATAGATTCCACGCCAAAGAGTTTTGTGTATATTT 126 31 100.0 36 ............................... AGACATAAAAGACATAAATTTGAACAATTCGGATTT 193 31 100.0 35 ............................... CCGTAAAGCAAAGCTTGTCTTTCGTCAAAACTTAA 259 31 100.0 36 ............................... TAGCGGGATAGAGAGGAGGCACTCTGTCAGACCAGT 326 31 100.0 36 ............................... CCGAAACTGTCGCCGTTTATTTTTATAGCGTCCGCT 393 31 100.0 37 ............................... TAGCATATACTGCTGGCTACACTTCTAAAAAATATGG 461 31 100.0 36 ............................... TTATTGGAATCTTTTCAGATACACAGAGCAATTCAG 528 31 100.0 37 ............................... ATAAATATATTTTCGATAATTCTTTTTTCATACTTGC 596 31 100.0 36 ............................... TAAATAGACTAATTAAAAATATACGAATTCGGACTA 663 31 100.0 36 ............................... GAAGCGTCCTTCGTAATCTTTCAAATCATCGCAAGT 730 31 100.0 35 ............................... AAGCTATAGCATAATAGCATCGCAACCTTATAAGA 796 31 100.0 37 ............................... AAACAAACTCTTGGAGAGCCGATGGCCGTGCCTATAA 864 31 100.0 36 ............................... ATATGTATAGTATGTCAAGATACTCTATACATATCG 931 31 100.0 36 ............................... TGGAGAACAAATATACGAAGTATTTTACGATAGAAA 998 31 100.0 37 ............................... CGCGATTATTTTACTACGGTTTTGCCTATTCAACAGA 1066 31 100.0 36 ............................... AATATTTTTTCGGCAATACATTTTCAAAAAATAAAG 1133 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 17 31 100.0 36 ATAATAAATCTAACCATAGTGGAATGTAAAT # Left flank : TCTAACCATAGTGGAATGTAAATTCTATATATTCGATATAGCCTCTAAATTTTAATTTAA # Right flank : AATAACCGTGCCGTCCGTTTGTTTTTCTCTCTTATAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 25-255 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJDU01000898.1 Brachyspira catarrhinii strain Z12 Contig_909, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 25 31 100.0 35 ............................... TCGTGTATGATAATTGATTCATAACATCGCTAAAC 91 31 100.0 36 ............................... GTATCGGATGATAACGGTATAACTATAACCGCTGGA 158 31 100.0 36 ............................... AAAAACGTTATCAGAAGTAGAAAATACAGAATTAGC 225 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 100.0 36 ATAATAAATCTAACCATAGTGGAATGTAAAT # Left flank : GAGAGCCGATGGCCGTGCCTATAAA # Right flank : AAACAAACTCTTGGAGAGCCGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //